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BaseInfo

ncRNA ID	gra-miR8775
Species	Gossypium raimondii
Class	miRNA
Genome position	chr13:51821710-51822028 [-]
Reference genome	Graimondii2_0
Source	miRBase
Length	21
Mature sequence(if miRNA)	289 - UUGUGAGAUUGAAGCUGAUGG - 309
Stem-loop(if miRNA)	-                        C      GA            -A     C    AAACUCGU   A         G  A  A        U      -----     ------AUU    CAAGCAUUCCGUUUUCCAAAUAAGUGGUUGGUUCUUGGUUA  GAGACUUCAAUUGUGAGAUUGAAG UGAUGG  AAGUGGUAAUAA  GGGAU CUAA        GAG AAAUAGUAU CA GG CUUUGAAA UUUUCU     UCACA         GCUU                                         U  |||||||||||||||||||||||| ||||||  ||||||||||||  ||||| ||||        ||| ||||||||| || || |||||||| ||||||     |||||         ||||  CUCUGAAGUUAACACUCUAAUUUC ACUACU  UUUACCAUUAUU  CCCUA GAUU        CUC UUUAUCAUA GU CC GAAACUUU AAAAGA     AGUGU         ACGG                                         U U                        A      UC            CC     U    GUUACCCC   G         A  C  C        U      AUACG     GUUUUAGAU    GUGGCUGUGCGAAGUAGAGUAAGUUCGAUGAACCAGGGCAG
Stem-loop sequence	GAGACUUCAAUUGUGAGAUUGAAGCUGAUGGGAAAGUGGUAAUAAAGGGAUCCUAAAAACUCGUGAGAAAAUAGUAUGCAAGGACUUUGAAAUUUUUCUUCACAAUUGCUUCAAGCAUUCCGUUUUCCAAAUAAGUGGUUGGUUCUUGGUUAUUGACGGGACCAAGUAGCUUGAAUGAGAUGAAGCGUGUCGGUGGGCAUAGAUUUUGUGUGAGCAUAAGAAAAUUUUCAAAGCCCCUGAAUACUAUUUGCUCCCCCAUUGUUAGUAUCCCCCUUAUUACCAUUUCUUCAUCAACUUUAAUCUCACAAUUGAAGUCUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012599111.1	ncRNA:21   GGUAGUCGAAGUUAGAGUGUU   1   =|*|||*|||||||||||||| targets:53   UCUUCAACUUCAAUCUCACAA   73 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii two-component response regulator ARR2-like (LOC105776456), transcript variant X2, mRNA	two-component response regulator ARR2-like(LOC105776456)	coding protein	psRNATarget
XM_012599110.1	ncRNA:21   GGUAGUCGAAGUUAGAGUGUU   1   =|*|||*|||||||||||||| targets:52   UCUUCAACUUCAAUCUCACAA   72 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii two-component response regulator ARR2-like (LOC105776456), transcript variant X1, mRNA	two-component response regulator ARR2-like(LOC105776456)	coding protein	psRNATarget
XM_012632995.1	ncRNA:21   GGUAGUCGAAGUUAGAGUGUU   1   |=||||*||||*||||||||| targets:56   CUAUCAUCUUCUAUCUCACAA   76 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii protein PLANT CADMIUM RESISTANCE 6-like (LOC105801737), mRNA	protein PLANT CADMIUM RESISTANCE 6-like(LOC105801737)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).