| ncRNA ID | gra-miR8676 |
| Species | Gossypium raimondii |
| Class | miRNA |
| Genome position | chr13:48939991-48940366 [+] |
| Reference genome | Graimondii2_0 |
| Source | miRBase |
| Length | 23 |
| Mature sequence(if miRNA) | 344 - AAGGUUGAUGGUUAAAUUUGACU - 366 |
| Stem-loop(if miRNA) |
UGUGUUUUUU C GUUAAAUC A - ---AU A GU C A U ---------------------------------------------------------------------A ACUAUUUGUCAUGCAA AGUUAAAUUUGACCAUUAACUUUU AAAAAGA AUUUUUUUAA UGGAAAUAUUGACUAAAACAUUAA UUUUUAACG GCU ACGUG AGU C CGUG ACUUCAUGCUG UAUGAC U |||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||| ||||||||| ||| ||||| ||| | |||| ||||||||||| |||||| G UCAGUUUAAAUUGGUAGUUGGAAA UUUUUCU UAAAAAAAUU AUCUUUAUGAUUGAUUUUGUAAUU AAAAAUUGU CGA UGUAC UUA G GUAC UGAAGUACGAU UGUUAA C AAAAUUUUUC - --AAACUU - U ACCAU G UG A A C GAAAACACAUAAAAAUACUUGAAAAAUAUUAAAAAACCUAAAACCUAAAAAAUAAAAUAACUUAUAUAAA AAAUUUAAUAAACAAU |
| Stem-loop sequence | UGUGUUUUUUAGUUAAAUUUGACCAUUAACUUUUCAAAAAGAGUUAAAUCAUUUUUUUAAAUGGAAAUAUUGACUAAAACAUUAAUUUUUAACGAUGCUAACGUGGUAGUCCACGUGUACUUCAUGCUGAUAUGACACUAUUUGUCAUGCAAUGCUAACAAAUAAUUUAAAAAUUGUAAAUAUAUUCAAUAAAAUAAAAAAUCCAAAAUCCAAAAAAUUAUAAAAAGUUCAUAAAAAUACACAAAAGUAGCAUGAAGUCCAUGAGAAUUGUCAUGUGAGCUACCAUGUUAAAAAUUUAAUGUUUUAGUUAGUAUUUCUAUUAAAAAAAUUUCAAAUCUUUUUAAAGGUUGAUGGUUAAAUUUGACUCUUUUUAAAA |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_012628648.1 |
|
2.5 | PREDICTED: Gossypium raimondii tyrosine decarboxylase 1-like (LOC105798535), mRNA | tyrosine decarboxylase 1-like(LOC105798535) | coding protein | psRNATarget |
| 1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |