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BaseInfo

ncRNA ID	gra-miR7492l
Species	Gossypium raimondii
Class	miRNA
Genome position	chr13:39672708-39672834 [+]
Reference genome	Graimondii2_0
Source	miRBase
Length	24
Mature sequence(if miRNA)	11 - CUAUAGAACAUGACCUUUAGCAGC - 34
Stem-loop(if miRNA)	-       C     U                CA   C    UCCACAAA        U   AC  AAAAACG CGCUA AGAACAUGACCUUUAG  GCG UUUU        CGCCGCUG AGG  A  ||||||| ||||| ||||||||||||||||  ||| ||||        |||||||| |||  UUUUUGC GUGAU UCUUGUACUGGAAAUC  CGC AAAA        GCGGCGAU UCC  U A       C     U                AC   A    UCCUUUUC        U   AG
Stem-loop sequence	AAAAACGCCGCUAUAGAACAUGACCUUUAGCAGCGCUUUUUCCACAAACGCCGCUGUAGGACAUGACCUUUAGCGGCGCUUUUCCUAAAAACGCCACUAAAGGUCAUGUUCUUUAGUGCCGUUUUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012619119.1	ncRNA:24   CGACGAUUUCCAGUACAAGAUAUC   1   *|*|||||=|||||||||||*||| targets:1145   ACCGCUAAGGGUCAUGUUCUUUAG   1168 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X3, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619119.1	ncRNA:24   CGACGAUUUCCAGUACAAGAUAUC   1   |=*|||*|||||||||||||*||| targets:1231   GUCGCUUAAGGUCAUGUUCUUUAG   1254 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X3, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619119.1	ncRNA:24   CGACGAUUUCCAGUACAAGAUAUC   1   |=*|||*|||||||||||||*||| targets:1317   GUCGCUUAAGGUCAUGUUCUUUAG   1340 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X3, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619119.1	ncRNA:24   CGACGAUUUCCAGUACAAGAUAUC   1   *|*|||||||*|||||||||*||| targets:1060   UCCGCUAAAGAUCAUGUUCUUUAG   1083 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X3, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619118.1	ncRNA:24   CGACGAUUUCCAGUACAAGAUAUC   1   *|*|||||=|||||||||||*||| targets:1147   ACCGCUAAGGGUCAUGUUCUUUAG   1170 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X2, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619118.1	ncRNA:24   CGACGAUUUCCAGUACAAGAUAUC   1   |=*|||*|||||||||||||*||| targets:1233   GUCGCUUAAGGUCAUGUUCUUUAG   1256 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X2, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619118.1	ncRNA:24   CGACGAUUUCCAGUACAAGAUAUC   1   |=*|||*|||||||||||||*||| targets:1319   GUCGCUUAAGGUCAUGUUCUUUAG   1342 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X2, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619118.1	ncRNA:24   CGACGAUUUCCAGUACAAGAUAUC   1   *|*|||||||*|||||||||*||| targets:1062   UCCGCUAAAGAUCAUGUUCUUUAG   1085 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X2, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619117.1	ncRNA:24   CGACGAUUUCCAGUACAAGAUAUC   1   *|*|||||=|||||||||||*||| targets:1318   ACCGCUAAGGGUCAUGUUCUUUAG   1341 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X1, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619117.1	ncRNA:24   CGACGAUUUCCAGUACAAGAUAUC   1   |=*|||*|||||||||||||*||| targets:1404   GUCGCUUAAGGUCAUGUUCUUUAG   1427 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X1, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619117.1	ncRNA:24   CGACGAUUUCCAGUACAAGAUAUC   1   |=*|||*|||||||||||||*||| targets:1490   GUCGCUUAAGGUCAUGUUCUUUAG   1513 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X1, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619117.1	ncRNA:24   CGACGAUUUCCAGUACAAGAUAUC   1   *|*|||||||*|||||||||*||| targets:1233   UCCGCUAAAGAUCAUGUUCUUUAG   1256 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X1, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).