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BaseInfo

ncRNA ID	gra-miR8644
Species	Gossypium raimondii
Class	miRNA
Genome position	chr13:35193216-35193363 [+]
Reference genome	Graimondii2_0
Source	miRBase
Length	21
Mature sequence(if miRNA)	11 - UUAAACUCCAGAAGUAGGGCU - 31
Stem-loop(if miRNA)	AGU    C  U         G        C    AU          A   AUUUAAUUAUUA    CAU  A    C    GAAG UU UAAACUCCA AAGUAGGG UAGA  GUUGUCAUGU UCU            UAGG   UA UUAA U    |||| || ||||||||| |||||||| ||||  |||||||||| |||            ||||   || |||| U    CUUC AG AUUUGAGGU UUCGUUUC AUCU  CAACGGUACA AGA            AUCC   AU AAUU U UAU    A  U         G        A    CC          C   ---------AUG    UAU  A    C
Stem-loop sequence	AGUGAAGCUUUUAAACUCCAGAAGUAGGGCUAGAAUGUUGUCAUGUAUCUAUUUAAUUAUUAUAGGCAUUAAUUAACUUUCUUAAAUAUAUCCUAGUAAGACACAUGGCAACCCUCUAACUUUGCUUGUGGAGUUUAUGAACUUCUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012588844.1	ncRNA:21   UCGGGAUGAAGACCUCAAAUU   1   **||||*||||||||||||=| targets:103   UCCCCUUCUUCUGGAGUUUGA   123 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii integrator complex subunit 3 (LOC105768723), transcript variant X4, mRNA	integrator complex subunit 3(LOC105768723)	coding protein	psRNATarget
XM_012588846.1	ncRNA:21   UCGGGAUGAAGACCUCAAAUU   1   **||||*||||||||||||=| targets:103   UCCCCUUCUUCUGGAGUUUGA   123 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii integrator complex subunit 3 (LOC105768723), transcript variant X5, mRNA	integrator complex subunit 3(LOC105768723)	coding protein	psRNATarget
XM_012588843.1	ncRNA:21   UCGGGAUGAAGACCUCAAAUU   1   **||||*||||||||||||=| targets:103   UCCCCUUCUUCUGGAGUUUGA   123 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii integrator complex subunit 3 (LOC105768723), transcript variant X3, mRNA	integrator complex subunit 3(LOC105768723)	coding protein	psRNATarget
XM_012588842.1	ncRNA:21   UCGGGAUGAAGACCUCAAAUU   1   **||||*||||||||||||=| targets:103   UCCCCUUCUUCUGGAGUUUGA   123 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii integrator complex subunit 3 (LOC105768723), transcript variant X2, mRNA	integrator complex subunit 3(LOC105768723)	coding protein	psRNATarget
XM_012588841.1	ncRNA:21   UCGGGAUGAAGACCUCAAAUU   1   **||||*||||||||||||=| targets:103   UCCCCUUCUUCUGGAGUUUGA   123 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii integrator complex subunit 3 (LOC105768723), transcript variant X1, mRNA	integrator complex subunit 3(LOC105768723)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).