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BaseInfo

ncRNA ID gra-miR8654b
Species Gossypium raimondii
Class miRNA
Genome position chr13:13905950-13906260 [-]
Reference genome Graimondii2_0
Source miRBase
Length 24
Mature sequence(if miRNA) 11 - AAGGAUACUACUUUGAUGGAGAAA - 34
Stem-loop(if miRNA) A                                        A    CCAAU       GC  A U      C  U        U      AA             UA         - C      GC  C     UC GU  C  U  CU  G   A
 ACUUAUUCUUUUUCUCCAUCAAAGUAGUAUCCUUAACCUC UUGU     ACUUGUG  AG G UGGGGG AA AAGACUUU CGGGGG  GAGUGAUUGUGAC  UGGAGAAAA G UGAAAU  GA UCAAG  G  AA GG UG  GU AUU A
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 UGAAUAAGAAAAAGAGGUAGUUUCAUCAUAGGAAUUGGAG AACA     UGAAUAC  UC C AUCCCC UU UUUUGAAA GUCCCC  CUCAUUGACACUG  ACCUCUUUU C ACUUUA  CU AGUUC  C  UU CC AC  CA UAA A
-                                        C    AACUU       AA  A C      A  C        -      --             CC         U A      AA  C     CA UG  A  C  AU  A   U
Stem-loop sequence AACUUAUUCUUUUUCUCCAUCAAAGUAGUAUCCUUAACCUCAUUGUCCAAUACUUGUGGCAGAGUUGGGGGCAAUAAGACUUUUCGGGGGAAGAGUGAUUGUGACUAUGGAGAAAAGCUGAAAUGCGACUCAAGUCGGUAACGGUUGCUGUGAUUAAAUAAUAACUACACCCAUUGUCACCUUGACUCAAAUUUCAACUUUUUCUCCACCGUCACAGUUACUCCCCCUGAAAGUUUUCUUACCCCUACCACUAACAUAAGUUUCAAACAACGAGGUUAAGGAUACUACUUUGAUGGAGAAAAAGAAUAAGU

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).