ncRNA ID | gra-miR8654b |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr13:13905950-13906260 [-] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 11 - AAGGAUACUACUUUGAUGGAGAAA - 34 |
Stem-loop(if miRNA) |
A                                        A    CCAAU       GC  A U      C  U        U      AA             UA         - C      GC  C     UC GU  C  U  CU  G   A  ACUUAUUCUUUUUCUCCAUCAAAGUAGUAUCCUUAACCUC UUGU     ACUUGUG  AG G UGGGGG AA AAGACUUU CGGGGG  GAGUGAUUGUGAC  UGGAGAAAA G UGAAAU  GA UCAAG  G  AA GG UG  GU AUU A  |||||||||||||||||||||||||||||||||||||||| ||||     |||||||  || | |||||| || |||||||| ||||||  |||||||||||||  ||||||||| | ||||||  || |||||  |  || || ||  || |||  UGAAUAAGAAAAAGAGGUAGUUUCAUCAUAGGAAUUGGAG AACA     UGAAUAC  UC C AUCCCC UU UUUUGAAA GUCCCC  CUCAUUGACACUG  ACCUCUUUU C ACUUUA  CU AGUUC  C  UU CC AC  CA UAA A -                                        C    AACUU       AA  A C      A  C        -      --             CC         U A      AA  C     CA UG  A  C  AU  A   U |
Stem-loop sequence | AACUUAUUCUUUUUCUCCAUCAAAGUAGUAUCCUUAACCUCAUUGUCCAAUACUUGUGGCAGAGUUGGGGGCAAUAAGACUUUUCGGGGGAAGAGUGAUUGUGACUAUGGAGAAAAGCUGAAAUGCGACUCAAGUCGGUAACGGUUGCUGUGAUUAAAUAAUAACUACACCCAUUGUCACCUUGACUCAAAUUUCAACUUUUUCUCCACCGUCACAGUUACUCCCCCUGAAAGUUUUCUUACCCCUACCACUAACAUAAGUUUCAAACAACGAGGUUAAGGAUACUACUUUGAUGGAGAAAAAGAAUAAGU |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |