ncRNA ID | gra-miR8654a |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr13:13905949-13906259 [+] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 278 - AAGGAUACUACUUUGAUGGAGAAA - 301 |
Stem-loop(if miRNA) |
A                                              UG A    A  U   U GUA       G  A     CA       ---UAAC      G          A        U   G    ---      AAUG G   A    U  ACUUAUUCUUUUUCUCCAUCAAAGUAGUAUCCUUAACCUCGUUGUU  A ACUU UG UAG G   GGGGUAA AA ACUUU  GGGGGAG       UGUGAC GUGGAGAAAA GUUGAAAU UGA UCAA   GGUGAC    G UGU GUUA U  ||||||||||||||||||||||||||||||||||||||||||||||  | |||| || ||| |   ||||||| || |||||  |||||||       |||||| |||||||||| |||||||| ||| ||||   ||||||    | ||| |||| A  UGAAUAAGAAAAAGAGGUAGUUUCAUCAUAGGAAUUGGAGUAACAG  U UGAA AC GUC C   CCCCGUU UU UGAAA  CCCCCUU       ACACUG UACCUCUUUU CGACUUUA GCU AGUU   CCAUUG    C ACA UAAU U -                                              GU A    C  C   U AAC       A  C     AG       CUCACUA      A          -        C   G    CAG      CCAA G   C    U |
Stem-loop sequence | AACUUAUUCUUUUUCUCCAUCAAAGUAGUAUCCUUAACCUCGUUGUUUGAAACUUAUGUUAGUGGUAGGGGUAAGAAAACUUUCAGGGGGAGUAACUGUGACGGUGGAGAAAAAGUUGAAAUUUGAGUCAAGGUGACAAUGGGUGUAGUUAUUAUUUAAUCACAGCAACCGUUACCGACUUGAGUCGCAUUUCAGCUUUUCUCCAUAGUCACAAUCACUCUUCCCCCGAAAAGUCUUAUUGCCCCCAACUCUGCCACAAGUAUUGGACAAUGAGGUUAAGGAUACUACUUUGAUGGAGAAAAAGAAUAAGU |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |