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BaseInfo

ncRNA ID gra-miR8654a
Species Gossypium raimondii
Class miRNA
Genome position chr13:13905949-13906259 [+]
Reference genome Graimondii2_0
Source miRBase
Length 24
Mature sequence(if miRNA) 278 - AAGGAUACUACUUUGAUGGAGAAA - 301
Stem-loop(if miRNA) A                                              UG A    A  U   U GUA       G  A     CA       ---UAAC      G          A        U   G    ---      AAUG G   A    U
 ACUUAUUCUUUUUCUCCAUCAAAGUAGUAUCCUUAACCUCGUUGUU  A ACUU UG UAG G   GGGGUAA AA ACUUU  GGGGGAG       UGUGAC GUGGAGAAAA GUUGAAAU UGA UCAA   GGUGAC    G UGU GUUA U
 ||||||||||||||||||||||||||||||||||||||||||||||  | |||| || ||| |   ||||||| || |||||  |||||||       |||||| |||||||||| |||||||| ||| ||||   ||||||    | ||| |||| A
 UGAAUAAGAAAAAGAGGUAGUUUCAUCAUAGGAAUUGGAGUAACAG  U UGAA AC GUC C   CCCCGUU UU UGAAA  CCCCCUU       ACACUG UACCUCUUUU CGACUUUA GCU AGUU   CCAUUG    C ACA UAAU U
-                                              GU A    C  C   U AAC       A  C     AG       CUCACUA      A          -        C   G    CAG      CCAA G   C    U
Stem-loop sequence AACUUAUUCUUUUUCUCCAUCAAAGUAGUAUCCUUAACCUCGUUGUUUGAAACUUAUGUUAGUGGUAGGGGUAAGAAAACUUUCAGGGGGAGUAACUGUGACGGUGGAGAAAAAGUUGAAAUUUGAGUCAAGGUGACAAUGGGUGUAGUUAUUAUUUAAUCACAGCAACCGUUACCGACUUGAGUCGCAUUUCAGCUUUUCUCCAUAGUCACAAUCACUCUUCCCCCGAAAAGUCUUAUUGCCCCCAACUCUGCCACAAGUAUUGGACAAUGAGGUUAAGGAUACUACUUUGAUGGAGAAAAAGAAUAAGU

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).