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BaseInfo

ncRNA ID gra-miR8639d
Species Gossypium raimondii
Class miRNA
Genome position chr13:11302130-11302331 [+]
Reference genome Graimondii2_0
Source miRBase
Length 24
Mature sequence(if miRNA) 169 - UAAACAUAAGUAGAAUUAAACAAG - 192
Stem-loop(if miRNA) G                                                 --     --- U  GAAAGUUGUUUUUGUCUAAUUUUUUUUUAUAUUUUUCAA
 UAAUGGAAGACUUGUUUAAUUCUACUUAUGUUUAACAAUUCUUUUAAGU  GACAA   A AU                                       A
 |||||||||||||||||||||||||||||||||||||||||||||||||  |||||   | ||                                       U
 AUUACCUUCUGAACAAAUUAAGAUGAAUACAAAUUGUUGAGAAAAUUCG  AGUUA   A UG                                       G
-                                                 AA     UAU -  AUUGGUCUAAAAUCAUUACUUUGACUGAAAAUAUAAAUU
Stem-loop sequence GUAAUGGAAGACUUGUUUAAUUCUACUUAUGUUUAACAAUUCUUUUAAGUGACAAAUAUGAAAGUUGUUUUUGUCUAAUUUUUUUUUAUAUUUUUCAAAUGUUAAAUAUAAAAGUCAGUUUCAUUACUAAAAUCUGGUUAGUAUAUAUUGAAAGCUUAAAAGAGUUGUUAAACAUAAGUAGAAUUAAACAAGUCUUCCAUUA

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).