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BaseInfo

ncRNA ID gra-miR7504k
Species Gossypium raimondii
Class miRNA
Genome position chr13:5200008-5200098 [-]
Reference genome Graimondii2_0
Source miRBase
Length 24
Mature sequence(if miRNA) 58 - UUUCUCCUGAUUUUUAGCAUUUUU - 81
Stem-loop(if miRNA) AUC         U                U    AGU    UUUG
   AGAUUUUUU CUCCUGAUUUUUAGCA UUUU   UGAA    A
   ||||||||| |||||||||||||||| ||||   ||||
   UCUAAAAAG GAGGACUAAAAGUCGU AAAG   AUUU    A
UAU         -                U    GAU    UUUU
Stem-loop sequence AUCAGAUUUUUUUCUCCUGAUUUUUAGCAUUUUUAGUUGAAUUUGAAUUUUUUUAUAGGAAAUUGCUGAAAAUCAGGAGGAAAAAUCUUAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012631475.1
ncRNA:24   UUUUUACGAUUUUUAGUCCUCUUU   1
  =|==||||||||||*|||||||||
targets:546   GAGGAUGCUAAAAAACAGGAGAAA   569

1.5 PREDICTED: Gossypium raimondii UV radiation resistance-associated gene protein-like (LOC105800377), transcript variant X1, mRNA UV radiation resistance-associated gene protein-like(LOC105800377) coding protein psRNATarget

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).