ncRNA ID | gra-miR8771a |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr13:5061901-5062177 [-] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 11 - GGAUUGUCGUUAGGGAGGUAA - 31 |
Stem-loop(if miRNA) |
A                   C           ---  AUGGGUUUUAAAUGCCAACUGGGAUAAGAAUAAUUUUUUCAAUCAAAAUGGAAAAGAAAACUAAAAGAAAGGAGACAAAUGAUUUUUUUUUCCAGUUUAAGG  UUGAGCUUUGUUACCUCUC AACGGCAAUCC   GA                                                                                                      U  ||||||||||||||||||| |||||||||||   ||                                                                                                      G  AAUUCGAGACAAUGGAGGG UUGCUGUUAGG   UG                                                                                                      U -                   A           AUA  UUGUCAGGUUUACCCAAAAUUUAUGGUUGAACUUACAGACUAACUCUGAUCUUGUCCAAAAAUUAAUUUAUUAAAAUUAAUUAAUUUUUAAAAUUUAAUUAA |
Stem-loop sequence | AUUGAGCUUUGUUACCUCUCCAACGGCAAUCCGAAUGGGUUUUAAAUGCCAACUGGGAUAAGAAUAAUUUUUUCAAUCAAAAUGGAAAAGAAAACUAAAAGAAAGGAGACAAAUGAUUUUUUUUUCCAGUUUAAGGUGUAAUUAAUUUAAAAUUUUUAAUUAAUUAAAAUUAUUUAAUUAAAAACCUGUUCUAGUCUCAAUCAGACAUUCAAGUUGGUAUUUAAAACCCAUUUGGACUGUUGUAUAGGAUUGUCGUUAGGGAGGUAACAGAGCUUAA |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |