Search result

BaseInfo

ncRNA ID gra-miR8771a
Species Gossypium raimondii
Class miRNA
Genome position chr13:5061901-5062177 [-]
Reference genome Graimondii2_0
Source miRBase
Length 21
Mature sequence(if miRNA) 11 - GGAUUGUCGUUAGGGAGGUAA - 31
Stem-loop(if miRNA) A                   C           ---  AUGGGUUUUAAAUGCCAACUGGGAUAAGAAUAAUUUUUUCAAUCAAAAUGGAAAAGAAAACUAAAAGAAAGGAGACAAAUGAUUUUUUUUUCCAGUUUAAGG
 UUGAGCUUUGUUACCUCUC AACGGCAAUCC   GA                                                                                                      U
 ||||||||||||||||||| |||||||||||   ||                                                                                                      G
 AAUUCGAGACAAUGGAGGG UUGCUGUUAGG   UG                                                                                                      U
-                   A           AUA  UUGUCAGGUUUACCCAAAAUUUAUGGUUGAACUUACAGACUAACUCUGAUCUUGUCCAAAAAUUAAUUUAUUAAAAUUAAUUAAUUUUUAAAAUUUAAUUAA
Stem-loop sequence AUUGAGCUUUGUUACCUCUCCAACGGCAAUCCGAAUGGGUUUUAAAUGCCAACUGGGAUAAGAAUAAUUUUUUCAAUCAAAAUGGAAAAGAAAACUAAAAGAAAGGAGACAAAUGAUUUUUUUUUCCAGUUUAAGGUGUAAUUAAUUUAAAAUUUUUAAUUAAUUAAAAUUAUUUAAUUAAAAACCUGUUCUAGUCUCAAUCAGACAUUCAAGUUGGUAUUUAAAACCCAUUUGGACUGUUGUAUAGGAUUGUCGUUAGGGAGGUAACAGAGCUUAA

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).