Search result

BaseInfo

ncRNA ID gra-miR8723a
Species Gossypium raimondii
Class miRNA
Genome position chr13:4595934-4596285 [-]
Reference genome Graimondii2_0
Source miRBase
Length 23
Mature sequence(if miRNA) 320 - UGUAACAGUAAGCUGACGUGACA - 342
Stem-loop(if miRNA) CC     AC                 C   A AAU                 AC     A                        C  C        ---  U       C      -      -          CUUUUAACUUUCCUUUAUUUUUUCUUUAUCUUCCAUUCCAUUA
  GUUAA  GUGUAACAGUAAGCUGA GUG C   UUAAAUUAUCAUUUCAA  AAAAA UUUAGGUUAAAUUAUAUAAUUGGU CC AUAUUUUU   UC UUUUGAG AAUUUA UUUUUU CUUUUAUGUU                                           U
  |||||  ||||||||||||||||| ||| |   |||||||||||||||||  ||||| |||||||||||||||||||||||| || ||||||||   || ||||||| |||||| |||||| ||||||||||                                           U
  CAAUU  CACAUUGUCAUUCGACU CAC G   AAUUUAGUAGUAAAGUU  UUUUU AAAUCCAAUUUAAUAUGUUAACCA GG UAUAAAAA   AG AAAACUC UUAAAU AAAAAA GAAAAUGCAA                                           U
GA     GC                 A   C CAC                 CA     A                        A  A        AAA  C       A      U      U          UUUUAUCUACCUCUUCUCUCCUUUUAUCUCCCUCUCUUCAUCU
Stem-loop sequence CCGUUAAACGUGUAACAGUAAGCUGACGUGACAAUUUAAAUUAUCAUUUCAAACAAAAAAUUUAGGUUAAAUUAUAUAAUUGGUCCCCAUAUUUUUUCUUUUUGAGCAAUUUAUUUUUUCUUUUAUGUUCUUUUAACUUUCCUUUAUUUUUUCUUUAUCUUCCAUUCCAUUAUUUUCUACUUCUCUCCCUCUAUUUUCCUCUCUUCUCCAUCUAUUUUAACGUAAAAGUAAAAAAUUAAAUUACUCAAAACGAAAAAAAAAUAUAGGAACCAAUUGUAUAAUUUAACCUAAAAUUUUUACUUGAAAUGAUGAUUUAACACGCCACAUCAGCUUACUGUUACACCGUUAACAG

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).