ncRNA ID | gra-miR8723a |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr13:4595934-4596285 [-] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 23 |
Mature sequence(if miRNA) | 320 - UGUAACAGUAAGCUGACGUGACA - 342 |
Stem-loop(if miRNA) |
CC     AC                 C   A AAU                 AC     A                        C  C        ---  U       C      -      -          CUUUUAACUUUCCUUUAUUUUUUCUUUAUCUUCCAUUCCAUUA   GUUAA  GUGUAACAGUAAGCUGA GUG C   UUAAAUUAUCAUUUCAA  AAAAA UUUAGGUUAAAUUAUAUAAUUGGU CC AUAUUUUU   UC UUUUGAG AAUUUA UUUUUU CUUUUAUGUU                                           U   |||||  ||||||||||||||||| ||| |   |||||||||||||||||  ||||| |||||||||||||||||||||||| || ||||||||   || ||||||| |||||| |||||| ||||||||||                                           U   CAAUU  CACAUUGUCAUUCGACU CAC G   AAUUUAGUAGUAAAGUU  UUUUU AAAUCCAAUUUAAUAUGUUAACCA GG UAUAAAAA   AG AAAACUC UUAAAU AAAAAA GAAAAUGCAA                                           U GA     GC                 A   C CAC                 CA     A                        A  A        AAA  C       A      U      U          UUUUAUCUACCUCUUCUCUCCUUUUAUCUCCCUCUCUUCAUCU |
Stem-loop sequence | CCGUUAAACGUGUAACAGUAAGCUGACGUGACAAUUUAAAUUAUCAUUUCAAACAAAAAAUUUAGGUUAAAUUAUAUAAUUGGUCCCCAUAUUUUUUCUUUUUGAGCAAUUUAUUUUUUCUUUUAUGUUCUUUUAACUUUCCUUUAUUUUUUCUUUAUCUUCCAUUCCAUUAUUUUCUACUUCUCUCCCUCUAUUUUCCUCUCUUCUCCAUCUAUUUUAACGUAAAAGUAAAAAAUUAAAUUACUCAAAACGAAAAAAAAAUAUAGGAACCAAUUGUAUAAUUUAACCUAAAAUUUUUACUUGAAAUGAUGAUUUAACACGCCACAUCAGCUUACUGUUACACCGUUAACAG |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |