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BaseInfo

ncRNA ID gra-miR8771b
Species Gossypium raimondii
Class miRNA
Genome position chr13:2497645-2497929 [+]
Reference genome Graimondii2_0
Source miRBase
Length 21
Mature sequence(if miRNA) 255 - GGAUUGUCGUUAGGGAGGUAA - 275
Stem-loop(if miRNA) G        C               GU     UAUGUGACAA        A          C      -AGAU    AAUUAGGACUAGAAUAGGUUUUUAAUUAAAUAAAUUUAAUUAAUUAAAAGUUUAAAACUAAUUACACCU
 UUAAACUC AUUACCUCCCUAACG  AAUCC          UUCAAAUG GUUUUAAAUG CAACUU     GUCC                                                                     U
 |||||||| |||||||||||||||  |||||          |||||||| |||||||||| ||||||     ||||                                                                     G
 AAUUUGAG UAAUGGAGGGAUUGC  UUAGG          AGGUUUAU CAAAAUUUAC GUUGAA     UCUU                                                                     A
-        U               UG     --------UC        C          A      AUUAC    AUAAAAAAAGUCAGUUUUACCUUUUCUUUUGAUUUUCUUUUUACUCUGAUUACCAAAAAGAAAAAGUUA
Stem-loop sequence GUUAAACUCCAUUACCUCCCUAACGGUAAUCCUAUGUGACAAUUCAAAUGAGUUUUAAAUGCCAACUUAGAUGUCCAAUUAGGACUAGAAUAGGUUUUUAAUUAAAUAAAUUUAAUUAAUUAAAAGUUUAAAACUAAUUACACCUUGAAUUGAAAAAGAAAAACCAUUAGUCUCAUUUUUCUUUUAGUUUUCUUUUCCAUUUUGACUGAAAAAAAUAUUCUCAUUAAAGUUGACAUUUAAAACCUAUUUGGACUGGAUUGUCGUUAGGGAGGUAAUUGAGUUUAA

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).