ncRNA ID | gra-miR8771b |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr13:2497645-2497929 [+] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 255 - GGAUUGUCGUUAGGGAGGUAA - 275 |
Stem-loop(if miRNA) |
G        C               GU     UAUGUGACAA        A          C      -AGAU    AAUUAGGACUAGAAUAGGUUUUUAAUUAAAUAAAUUUAAUUAAUUAAAAGUUUAAAACUAAUUACACCU  UUAAACUC AUUACCUCCCUAACG  AAUCC          UUCAAAUG GUUUUAAAUG CAACUU     GUCC                                                                     U  |||||||| |||||||||||||||  |||||          |||||||| |||||||||| ||||||     ||||                                                                     G  AAUUUGAG UAAUGGAGGGAUUGC  UUAGG          AGGUUUAU CAAAAUUUAC GUUGAA     UCUU                                                                     A -        U               UG     --------UC        C          A      AUUAC    AUAAAAAAAGUCAGUUUUACCUUUUCUUUUGAUUUUCUUUUUACUCUGAUUACCAAAAAGAAAAAGUUA |
Stem-loop sequence | GUUAAACUCCAUUACCUCCCUAACGGUAAUCCUAUGUGACAAUUCAAAUGAGUUUUAAAUGCCAACUUAGAUGUCCAAUUAGGACUAGAAUAGGUUUUUAAUUAAAUAAAUUUAAUUAAUUAAAAGUUUAAAACUAAUUACACCUUGAAUUGAAAAAGAAAAACCAUUAGUCUCAUUUUUCUUUUAGUUUUCUUUUCCAUUUUGACUGAAAAAAAUAUUCUCAUUAAAGUUGACAUUUAAAACCUAUUUGGACUGGAUUGUCGUUAGGGAGGUAAUUGAGUUUAA |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |