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BaseInfo

ncRNA ID	gra-miR7484m
Species	Gossypium raimondii
Class	miRNA
Genome position	chr13:976428-976654 [-]
Reference genome	Graimondii2_0
Source	miRBase
Length	21
Mature sequence(if miRNA)	197 - UUUGUAUGUUAGAUCGAAGAG - 217
Stem-loop(if miRNA)	-        C       U                  U   C       -   U  A       CAU     -C       AACUAAUCCCUGUA  -  G     AGGAAUAUGUGGCACG  UAAAUUAG CUUUGUA GUUAGAUCGAAGAGCAAA UGG CCUUUUA UUG AA UUUCAUC   UUCUA  UGUUAAA              UG UC ACAUG                C  |||||||| ||||||| |||||||||||||||||| ||| ||||||| ||| || |||||||   |||||  |||||||              || || |||||  GUUUAAUC GGAAUAU CAAUUUAGUUUCUCGUUU AUC GGAAAAU AAU UU AAAGUAG   AAGAU  AUAAUUU              CG UA CGACU                C C        A       U                  C   A       C   U  A       -AU     UA       -----------GAU  C  -     ACCUUAUUGGUCUGUA
Stem-loop sequence	UAAAUUAGCCUUUGUAUGUUAGAUCGAAGAGCAAAUUGGCCCUUUUAUUGUAAAUUUCAUCCAUUUCUACUGUUAAAAACUAAUCCCUGUAUGUCGACAUGAGGAAUAUGUGGCACGCCAUGUCUGGUUAUUCCAUCAGCAUCGCUAGUUUAAUAAUUAGAAUAGAUGAAAAUUUUAACUAAAAGGACUACUUUGCUCUUUGAUUUAACUUAUAAGGACUAAUUUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012582272.1	ncRNA:21   GAGAAGCUAGAUUGUAUGUUU   1   |||||=||||||||=|||||| targets:863   CUCUUUGAUCUAACGUACAAA   883 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii delta(8)-fatty-acid desaturase-like (LOC105763878), transcript variant X2, mRNA	delta(8)-fatty-acid desaturase-like(LOC105763878)	coding protein	psRNATarget
XM_012582271.1	ncRNA:21   GAGAAGCUAGAUUGUAUGUUU   1   |||||=||||||||=|||||| targets:863   CUCUUUGAUCUAACGUACAAA   883 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii delta(8)-fatty-acid desaturase-like (LOC105763878), transcript variant X1, mRNA	delta(8)-fatty-acid desaturase-like(LOC105763878)	coding protein	psRNATarget
XM_012617602.1	ncRNA:21   GAGAAGCUAGAUUGUAUGUUU   1   |*|||=*|||||||||||||= targets:3137   CACUUUAAUCUAACAUACAAG   3157 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 (LOC105790161), transcript variant X2, mRNA	G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370(LOC105790161)	coding protein	psRNATarget
XM_012617601.1	ncRNA:21   GAGAAGCUAGAUUGUAUGUUU   1   |*|||=*|||||||||||||= targets:3224   CACUUUAAUCUAACAUACAAG   3244 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 (LOC105790161), transcript variant X1, mRNA	G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370(LOC105790161)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).