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BaseInfo

ncRNA ID gra-miR8730
Species Gossypium raimondii
Class miRNA
Genome position chr12:32606707-32606878 [-]
Reference genome Graimondii2_0
Source miRBase
Length 24
Mature sequence(if miRNA) 139 - CUAAGAGAUUGGGAUUUGGUAGGA - 162
Stem-loop(if miRNA) - UG  - G  A       -            U    U  UA    AGAACCUAAUUUAA    UCAAAUUACGACAAACCACUAUCAAAUU
 U  AA U AG CUAAGAG AUUGGGAUUUGG AGGA GA  UUGA              CGUA                            A
 |  || | || ||||||| |||||||||||| |||| ||  ||||              ||||                            C
 A  UU G UC GAUUUUC UGAUUUUAAAUC UCCU UU  AACU              CAGU                            G
A GU  A G  -       A            C    U  UA    -----------AAA    AGGAGAGUAAUUUUUCCCUAUUUCUACU
Stem-loop sequence UUGAAUGAGACUAAGAGAUUGGGAUUUGGUAGGAUGAUAUUGAAGAACCUAAUUUAACGUAUCAAAUUACGACAAACCACUAUCAAAUUACGUCAUCUUUAUCCCUUUUUAAUGAGAGGAUGACAAAUCAAAUUUUUCCUCCUAAAUUUUAGUACUUUUAGCUGGAUUUGAA

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).