ncRNA ID | gra-miR8669 |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr12:7740459-7740719 [-] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 11 - AAAGACGAAAGACAAAAUCUCAAU - 34 |
Stem-loop(if miRNA) |
C    A  A                -C  C            C   CA           A   G   -CACA   A    A        A              U       CAAU    GA  CACUCAUG  UCGG UU UAUUGAGGUUUUGUUU  CG CUUUAUUGAGAG CAA  UGCUGUGAGCA UUU AUU     GAG GAGA CACCUUGA GAAUUGGGCUAUAC UGGACGC    GGGC  GA        U  |||| || ||||||||||||||||  || |||||||||||| |||  ||||||||||| ||| |||     ||| |||| |||||||| |||||||||||||| |||||||    ||||  ||        C  AGCC AA AUAACUCUAAAACAGA  GC GAAAUAGCUCUC GUU  ACGGUACUCGU AAA UGA     UUC CUCU GUGGAACU CUUAGCUCGGUAUG ACCUGUG    UCCG  GA        C A    C  C                AA  A            A   AC           C   G   UUAUA   -    C        C              C       ---U    GU  AUGAUUCC |
Stem-loop sequence | CUCGGAUUAUAUUGAGGUUUUGUUUCCGCCUUUAUUGAGAGCCAACAUGCUGUGAGCAAUUUGAUUCACAGAGAGAGAACACCUUGAAGAAUUGGGCUAUACUUGGACGCCAAUGGGCGAGACACUCAUGUCCCCUUAGUAAGUGGCCUUGUGUCCACGUAUGGCUCGAUUCCUCAAGGUGCUCUCCUUAUAUUAGUGAAACUGCUCAUGGCACAUUGACUCUCGAUAAAGACGAAAGACAAAAUCUCAAUACAACCCGAA |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |