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BaseInfo

ncRNA ID gra-miR8669
Species Gossypium raimondii
Class miRNA
Genome position chr12:7740459-7740719 [-]
Reference genome Graimondii2_0
Source miRBase
Length 24
Mature sequence(if miRNA) 11 - AAAGACGAAAGACAAAAUCUCAAU - 34
Stem-loop(if miRNA) C    A  A                -C  C            C   CA           A   G   -CACA   A    A        A              U       CAAU    GA  CACUCAUG
 UCGG UU UAUUGAGGUUUUGUUU  CG CUUUAUUGAGAG CAA  UGCUGUGAGCA UUU AUU     GAG GAGA CACCUUGA GAAUUGGGCUAUAC UGGACGC    GGGC  GA        U
 |||| || ||||||||||||||||  || |||||||||||| |||  ||||||||||| ||| |||     ||| |||| |||||||| |||||||||||||| |||||||    ||||  ||        C
 AGCC AA AUAACUCUAAAACAGA  GC GAAAUAGCUCUC GUU  ACGGUACUCGU AAA UGA     UUC CUCU GUGGAACU CUUAGCUCGGUAUG ACCUGUG    UCCG  GA        C
A    C  C                AA  A            A   AC           C   G   UUAUA   -    C        C              C       ---U    GU  AUGAUUCC
Stem-loop sequence CUCGGAUUAUAUUGAGGUUUUGUUUCCGCCUUUAUUGAGAGCCAACAUGCUGUGAGCAAUUUGAUUCACAGAGAGAGAACACCUUGAAGAAUUGGGCUAUACUUGGACGCCAAUGGGCGAGACACUCAUGUCCCCUUAGUAAGUGGCCUUGUGUCCACGUAUGGCUCGAUUCCUCAAGGUGCUCUCCUUAUAUUAGUGAAACUGCUCAUGGCACAUUGACUCUCGAUAAAGACGAAAGACAAAAUCUCAAUACAACCCGAA

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).