| ncRNA ID | gra-miR8787 |
| Species | Gossypium raimondii |
| Class | miRNA |
| Genome position | chr12:5020967-5021101 [+] |
| Reference genome | Graimondii2_0 |
| Source | miRBase |
| Length | 23 |
| Mature sequence(if miRNA) | 103 - UUUUCUUUUAAUUGGACGAGAUA - 125 |
| Stem-loop(if miRNA) |
A C G C C - ------- U GAAAGUUUAGUC CAUCAU CAU AUC CG CUAAUUGAAAGAAGA CACAUCAUCUUU GG UU C |||||| ||| ||| || ||||||||||||||| |||||||||||| || || G GUAGUA GUA UAG GC GGUUAAUUUUCUUUU GUGUAGUAGAAA GU AU A - A A A A U AAAAAAA - AGUAUACAUAUA |
| Stem-loop sequence | ACAUCAUCCAUGAUCCCGCCUAAUUGAAAGAAGACACAUCAUCUUUGGUUUGAAAGUUUAGUCCGAAUAUACAUAUGAUAUGAAAAAAAAAAGAUGAUGUGUUUUUCUUUUAAUUGGACGAGAUAAUGAAUGAUG |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_012595111.1 |
|
2.5 | PREDICTED: Gossypium raimondii LRR receptor-like serine/threonine-protein kinase EFR (LOC105773330), transcript variant X1, mRNA | LRR receptor-like serine/threonine-protein kinase EFR(LOC105773330) | coding protein | psRNATarget | |||||||||
| XM_012622534.1 |
|
2.5 | PREDICTED: Gossypium raimondii ethylene-responsive transcription factor ERF027-like (LOC105793685), mRNA | ethylene-responsive transcription factor ERF027-like(LOC105793685) | coding protein | psRNATarget |
| 1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |