ncRNA ID | ath-miR869.2 |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr5:15891579-15891873 [-] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 36 - UCUGGUGUUGAGAUAGUUGAC - 56 |
Stem-loop(if miRNA) |
            GA   C         G     A  A   C          U                 C  G        UA       C       -       C       CUAUAA       A             ---C  U   U GCCCACCAUACA  UUU CAUACGGUA AAGAA GU UCA CUAUCUCAAC CCAGGAUUGGACCAGUA UA GCUCAUCA  GUUAAGC ACAAUCC ACGAUUC UCAUCAG      AAGCAAA CCUUCAUAUCUAU    CU GUU C ||||||||||||  ||| ||||||||| ||||| || ||| |||||||||| ||||||||||||||||| || ||||||||  ||||||| ||||||| ||||||| |||||||      ||||||| |||||||||||||    || ||| CGGGUGGUGUGU  AAA GUAUGCCAU UUCUU CA AGU GAUAGAGUUG GGUCUUAACUUGGUUAU AU CGAGUAGU  CAAUUCG UGUUAGG UGUUAGG AGUAGUC      UUUGUUU GGAAGUAUAGAUA    GA CAA U             AC   A         A     -  C   U          U                 U  A        CA       U       G       A       ------       C             CUCU  C   A |
Stem-loop sequence | GCCCACCAUACAGAUUUCCAUACGGUAGAAGAAAGUAUCACCUAUCUCAACUCCAGGAUUGGACCAGUACUAGGCUCAUCAUAGUUAAGCCACAAUCCACGAUUCCUCAUCAGCUAUAAAAGCAAAACCUUCAUAUCUAUCCUUGUUUCUAAACCAGUCUCAUAGAUAUGAAGGCUUUGUUUCUGAUGAAGGAUUGUGGGAUUGUUGCUUAACACUGAUGAGCAUAUUAUUGGUUCAAUUCUGGUGUUGAGAUAGUUGACACUUCUUAUACCGUAUGAAAACAUGUGUGGUGGGC |
1 | PMID:17299599
"High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"; Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC; PLoS One. 2:e219(2007). |
2 | PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"; Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW; J Exp Bot. 61:165-177(2010). |