ncRNA ID | gra-miR8749 |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr11:60620749-60621059 [+] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 11 - UCUCGGACCCUCAACGGAAGG - 31 |
Stem-loop(if miRNA) |
-     -GG  A          U                  U     C A             --------GU    --------- AU  A   CCCAAAGGGUUCCCGGAAUUUAAGAAGCACCUUGACUAAUGGAGAUAUGACUUGUAAGCUCAUGGGAGAAA  GGGAG   UG UCUCGGACCC CAACGGAAGGUAUUGUUC UGUGU G GAUUUUGUCUCUC          AUUC         C  GG GAG                                                                       U  |||||   || |||||||||| |||||||||||||||||| ||||| | |||||||||||||          ||||         |  || |||  UCCUU   GC AGAGUUUGGG GUUGCUUUUCAUAGCAAG ACACA C CUAAAACAGAGAG          ACCU         U  UC CGG                                                                       G U     ACA  C          -                  U     A C             AACAUAAAAC    ACAUUUCCA --  -   AAAUUCGGAACCAACCACCAAACUUGAGGGCGUUCGCGUUAUACGUAUUAAUUAUAAAACGUGUUAUAACU |
Stem-loop sequence | GGGAGGGUGAUCUCGGACCCUCAACGGAAGGUAUUGUUCUUGUGUCGAGAUUUUGUCUCUCGUAUUCCAUGGAGAGCCCAAAGGGUUCCCGGAAUUUAAGAAGCACCUUGACUAAUGGAGAUAUGACUUGUAAGCUCAUGGGAGAAAUGUCAAUAUUGUGCAAAAUAUUAAUUAUGCAUAUUGCGCUUGCGGGAGUUCAAACCACCAACCAAGGCUUAAAGGCCUUACCUUUACAUCCACAAAAUACAAGAGAGACAAAAUCCCAACACAUGAACGAUACUUUUCGUUGGGGUUUGAGACCGACAUUCCUU |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |