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BaseInfo

ncRNA ID gra-miR8749
Species Gossypium raimondii
Class miRNA
Genome position chr11:60620749-60621059 [+]
Reference genome Graimondii2_0
Source miRBase
Length 21
Mature sequence(if miRNA) 11 - UCUCGGACCCUCAACGGAAGG - 31
Stem-loop(if miRNA) -     -GG  A          U                  U     C A             --------GU    --------- AU  A   CCCAAAGGGUUCCCGGAAUUUAAGAAGCACCUUGACUAAUGGAGAUAUGACUUGUAAGCUCAUGGGAGAAA
 GGGAG   UG UCUCGGACCC CAACGGAAGGUAUUGUUC UGUGU G GAUUUUGUCUCUC          AUUC         C  GG GAG                                                                       U
 |||||   || |||||||||| |||||||||||||||||| ||||| | |||||||||||||          ||||         |  || |||
 UCCUU   GC AGAGUUUGGG GUUGCUUUUCAUAGCAAG ACACA C CUAAAACAGAGAG          ACCU         U  UC CGG                                                                       G
U     ACA  C          -                  U     A C             AACAUAAAAC    ACAUUUCCA --  -   AAAUUCGGAACCAACCACCAAACUUGAGGGCGUUCGCGUUAUACGUAUUAAUUAUAAAACGUGUUAUAACU
Stem-loop sequence GGGAGGGUGAUCUCGGACCCUCAACGGAAGGUAUUGUUCUUGUGUCGAGAUUUUGUCUCUCGUAUUCCAUGGAGAGCCCAAAGGGUUCCCGGAAUUUAAGAAGCACCUUGACUAAUGGAGAUAUGACUUGUAAGCUCAUGGGAGAAAUGUCAAUAUUGUGCAAAAUAUUAAUUAUGCAUAUUGCGCUUGCGGGAGUUCAAACCACCAACCAAGGCUUAAAGGCCUUACCUUUACAUCCACAAAAUACAAGAGAGACAAAAUCCCAACACAUGAACGAUACUUUUCGUUGGGGUUUGAGACCGACAUUCCUU

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).