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BaseInfo

ncRNA ID gra-miR8653a
Species Gossypium raimondii
Class miRNA
Genome position chr11:60619123-60619451 [+]
Reference genome Graimondii2_0
Source miRBase
Length 21
Mature sequence(if miRNA) 11 - UAAAUCUACGUAUGGAAAUUC - 31
Stem-loop(if miRNA) -               C         A      G   C         G                          U                             A                       A            UA                   CA
 ACAAUCGUGGUAAAU UACGUAUGG AAUUCU UGA ACUGGAUCC CUAUUACACUGGCCGUAAAAUAAGUU GAAUAAUUUUGAGGUGUUCCAAGGGGAUG GAUGGUCUCGGCCUUCCAUAACA GUAUACAUCUCC  GAGUAGUAGAACAUUAGUU  C
 ||||||||||||||| ||||||||| |||||| ||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||  G
 UGUUAGCACCAUUUA AUGCAUACC UUAAGA ACU UGACCUAGG GAUAAUGUGACCGGCAUUUUAUUCAA CUUGUUAAAACUCCACAAGGUUCCUCUAC CUACCAGAGUUGGAAGGUAUUGU UAUAUGUAGAGG  CUCAUCAUCUUGUAAUCAA  A
C               C         C      G   A         A                          -                             C                       A            GC                   CA
Stem-loop sequence ACAAUCGUGGUAAAUCUACGUAUGGAAAUUCUGUGACACUGGAUCCGCUAUUACACUGGCCGUAAAAUAAGUUUGAAUAAUUUUGAGGUGUUCCAAGGGGAUGAGAUGGUCUCGGCCUUCCAUAACAAGUAUACAUCUCCUAGAGUAGUAGAACAUUAGUUCACGAACAACUAAUGUUCUACUACUCCGGGAGAUGUAUAUAUGUUAUGGAAGGUUGAGACCAUCCCAUCUCCUUGGAACACCUCAAAAUUGUUCAACUUAUUUUACGGCCAGUGUAAUAGAGGAUCCAGUAUCAGAGAAUUCCCAUACGUACAUUUACCACGAUUGUC

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).