ncRNA ID | gra-miR8653a |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr11:60619123-60619451 [+] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 11 - UAAAUCUACGUAUGGAAAUUC - 31 |
Stem-loop(if miRNA) |
-               C         A      G   C         G                          U                             A                       A            UA                   CA  ACAAUCGUGGUAAAU UACGUAUGG AAUUCU UGA ACUGGAUCC CUAUUACACUGGCCGUAAAAUAAGUU GAAUAAUUUUGAGGUGUUCCAAGGGGAUG GAUGGUCUCGGCCUUCCAUAACA GUAUACAUCUCC  GAGUAGUAGAACAUUAGUU  C  ||||||||||||||| ||||||||| |||||| ||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||  G  UGUUAGCACCAUUUA AUGCAUACC UUAAGA ACU UGACCUAGG GAUAAUGUGACCGGCAUUUUAUUCAA CUUGUUAAAACUCCACAAGGUUCCUCUAC CUACCAGAGUUGGAAGGUAUUGU UAUAUGUAGAGG  CUCAUCAUCUUGUAAUCAA  A C               C         C      G   A         A                          -                             C                       A            GC                   CA |
Stem-loop sequence | ACAAUCGUGGUAAAUCUACGUAUGGAAAUUCUGUGACACUGGAUCCGCUAUUACACUGGCCGUAAAAUAAGUUUGAAUAAUUUUGAGGUGUUCCAAGGGGAUGAGAUGGUCUCGGCCUUCCAUAACAAGUAUACAUCUCCUAGAGUAGUAGAACAUUAGUUCACGAACAACUAAUGUUCUACUACUCCGGGAGAUGUAUAUAUGUUAUGGAAGGUUGAGACCAUCCCAUCUCCUUGGAACACCUCAAAAUUGUUCAACUUAUUUUACGGCCAGUGUAAUAGAGGAUCCAGUAUCAGAGAAUUCCCAUACGUACAUUUACCACGAUUGUC |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |