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BaseInfo

ncRNA ID	gra-miR172b
Species	Gossypium raimondii
Class	miRNA
Genome position	chr11:59826564-59826682 [+]
Reference genome	Graimondii2_0
Source	miRBase
Length	21
Mature sequence(if miRNA)	11 - GCAGCAUUAUCAAGAUUCACA - 31
Stem-loop(if miRNA)	GU    UG                    A   GAGG   UUU    U   UU        U   UUGC  CUGCAGCAUUAUCAAGAUUC CAA    CGU   AGGG CUU  UUGAUUGA U   ||||  |||||||||||||||||||| |||    |||   |||| |||  ||||||||   AACG  GACGUCGUAGUAGUUCUAAG GUU    GUA   UCCC GAA  AACUAACU G AU    GU                    A   ---A   UUU    -   -U        A
Stem-loop sequence	GUUUGCUGCUGCAGCAUUAUCAAGAUUCACAAGAGGCGUUUUAGGGUCUUUUUUGAUUGAUUGAUCAAUCAAUAAGCCCUUUUAUGAUUGAGAAUCUUGAUGAUGCUGCAGUGGCAAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012635701.1	ncRNA:21   ACACUUAGAACUAUUACGACG   1   *|||||*|||||*|||||||| targets:936   CGUGAAACUUGAAAAUGCUGC   956 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii 60S ribosomal protein L37-3-like (LOC105803485), mRNA	60S ribosomal protein L37-3-like(LOC105803485)	coding protein	psRNATarget
XM_012634362.1	ncRNA:21   ACACUUAGAACUAUUACGACG   1   *|||||*|||||*|||||||| targets:921   CGUGAAACUUGAAAAUGCUGC   941 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii polygalacturonate 4-alpha-galacturonosyltransferase-like (LOC105802622), mRNA	polygalacturonate 4-alpha-galacturonosyltransferase-like(LOC105802622)	coding protein	psRNATarget
XM_012636042.1	ncRNA:21   ACACUUAGAACUAUUACGACG   1   **||||*|*|||||||||||| targets:292   AAUGAAACAUGAUAAUGCUGC   312 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii protein preY, mitochondrial (LOC105803682), mRNA	protein preY, mitochondrial(LOC105803682)	coding protein	psRNATarget
XM_012619685.1	ncRNA:21   ACACUUAGAACUAUUACGACG   1   |*||||*|||||*|||||||| targets:863   UUUGAAACUUGAAAAUGCUGC   883 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii polygalacturonate 4-alpha-galacturonosyltransferase-like (LOC105791571), mRNA	polygalacturonate 4-alpha-galacturonosyltransferase-like(LOC105791571)	coding protein	psRNATarget
XM_012604862.1	ncRNA:21   ACACUUAGAACUAUUACGACG   1   ||*|||*|||||||||||||= targets:676   UGGGAAGCUUGAUAAUGCUGU   696 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii pentatricopeptide repeat-containing protein At1g13040, mitochondrial-like (LOC105780493), transcript variant X3, mRNA	pentatricopeptide repeat-containing protein At1g13040, mitochondrial-like(LOC105780493)	coding protein	psRNATarget
XM_012604860.1	ncRNA:21   ACACUUAGAACUAUUACGACG   1   ||*|||*|||||||||||||= targets:676   UGGGAAGCUUGAUAAUGCUGU   696 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii pentatricopeptide repeat-containing protein At1g13040, mitochondrial-like (LOC105780493), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At1g13040, mitochondrial-like(LOC105780493)	coding protein	psRNATarget
XM_012604861.1	ncRNA:21   ACACUUAGAACUAUUACGACG   1   ||*|||*|||||||||||||= targets:676   UGGGAAGCUUGAUAAUGCUGU   696 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii pentatricopeptide repeat-containing protein At1g13040, mitochondrial-like (LOC105780493), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At1g13040, mitochondrial-like(LOC105780493)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).