ncRNA ID | gra-miR8721a |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr11:57136165-57136556 [+] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 362 - CAUCGAUAGUUUGAGGAUGUA - 382 |
Stem-loop(if miRNA) |
A                             -      C  GCCAAA                        ------------           A      UAUA   AA    AAAUAAAAAUAGAAUGUUGUCGCAUAACUUUUAAAAGUAAAAAAUAAAAAUAAAGUAAAACUGAAUAAAAAGAGUGAACAAUAAAGCCUCC  CGUUUUAAUUAUAUCCUCAAAUUAUUGAU UUAUAU AA      UCCUUUCGUUAUUAAAAUUGUUAA            AUGACACAUUA AUCUUA    GCU  AUUU                                                                                           G  ||||||||||||||||||||||||||||| |||||| ||      ||||||||||||||||||||||||            ||||||||||| ||||||    |||  ||||  GUAAAAUUAAUGUAGGAGUUUGAUAGCUA AAUAUA UU      AGGAAGGUAAUAAUUUUAACAAUU            UACUGUGUGAU UAGAAU    UGA  UACA                                                                                           U A                             C      A  -AAUCC                        AAAUUGAUAAUU           A      ----   AA    AUAUAUUAAAUUUUACUUUUUGAAAUUCUUUUUUACUUAUACAUUUUUAACUACAAAAAUUUUUACAUCGAAACUCCAAAAGUUUCGAAAA |
Stem-loop sequence | ACGUUUUAAUUAUAUCCUCAAAUUAUUGAUUUAUAUCAAGCCAAAUCCUUUCGUUAUUAAAAUUGUUAAAUGACACAUUAAAUCUUAUAUAGCUAAAUUUAAAUAAAAAUAGAAUGUUGUCGCAUAACUUUUAAAAGUAAAAAAUAAAAAUAAAGUAAAACUGAAUAAAAAGAGUGAACAAUAAAGCCUCCGUAAAAGCUUUGAAAACCUCAAAGCUACAUUUUUAAAAACAUCAAUUUUUACAUAUUCAUUUUUUCUUAAAGUUUUUCAUUUUAAAUUAUAUAACAUAAAGUUAAGAUAUAGUGUGUCAUUUAAUAGUUAAAUUAACAAUUUUAAUAAUGGAAGGACCUAAUUAAUAUAACAUCGAUAGUUUGAGGAUGUAAUUAAAAUGA |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |