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BaseInfo

ncRNA ID gra-miR8721a
Species Gossypium raimondii
Class miRNA
Genome position chr11:57136165-57136556 [+]
Reference genome Graimondii2_0
Source miRBase
Length 21
Mature sequence(if miRNA) 362 - CAUCGAUAGUUUGAGGAUGUA - 382
Stem-loop(if miRNA) A                             -      C  GCCAAA                        ------------           A      UAUA   AA    AAAUAAAAAUAGAAUGUUGUCGCAUAACUUUUAAAAGUAAAAAAUAAAAAUAAAGUAAAACUGAAUAAAAAGAGUGAACAAUAAAGCCUCC
 CGUUUUAAUUAUAUCCUCAAAUUAUUGAU UUAUAU AA      UCCUUUCGUUAUUAAAAUUGUUAA            AUGACACAUUA AUCUUA    GCU  AUUU                                                                                           G
 ||||||||||||||||||||||||||||| |||||| ||      ||||||||||||||||||||||||            ||||||||||| ||||||    |||  ||||
 GUAAAAUUAAUGUAGGAGUUUGAUAGCUA AAUAUA UU      AGGAAGGUAAUAAUUUUAACAAUU            UACUGUGUGAU UAGAAU    UGA  UACA                                                                                           U
A                             C      A  -AAUCC                        AAAUUGAUAAUU           A      ----   AA    AUAUAUUAAAUUUUACUUUUUGAAAUUCUUUUUUACUUAUACAUUUUUAACUACAAAAAUUUUUACAUCGAAACUCCAAAAGUUUCGAAAA
Stem-loop sequence ACGUUUUAAUUAUAUCCUCAAAUUAUUGAUUUAUAUCAAGCCAAAUCCUUUCGUUAUUAAAAUUGUUAAAUGACACAUUAAAUCUUAUAUAGCUAAAUUUAAAUAAAAAUAGAAUGUUGUCGCAUAACUUUUAAAAGUAAAAAAUAAAAAUAAAGUAAAACUGAAUAAAAAGAGUGAACAAUAAAGCCUCCGUAAAAGCUUUGAAAACCUCAAAGCUACAUUUUUAAAAACAUCAAUUUUUACAUAUUCAUUUUUUCUUAAAGUUUUUCAUUUUAAAUUAUAUAACAUAAAGUUAAGAUAUAGUGUGUCAUUUAAUAGUUAAAUUAACAAUUUUAAUAAUGGAAGGACCUAAUUAAUAUAACAUCGAUAGUUUGAGGAUGUAAUUAAAAUGA

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).