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BaseInfo

ncRNA ID gra-miR827b
Species Gossypium raimondii
Class miRNA
Genome position chr11:55877977-55878115 [+]
Reference genome Graimondii2_0
Source miRBase
Length 21
Mature sequence(if miRNA) 11 - UUUGUUUAUGGUCAUCUAAGC - 31
Stem-loop(if miRNA) GU    UG        U              --       ------CAUCUCG    UUCUUUGUUCAAGCA
  UGAA  UGUUUGUU AUGGUCAUCUAAGC  CAUUUUU             CCAA               G
  ||||  |||||||| ||||||||||||||  |||||||             ||||               U
  ACUU  ACAAACAA UACCAGUAGAUUUG  GUAAAGG             UAGC               U
CU    CA        C              UA       CGCCCACAUAAGA    CAAGCUAAUAGGUUU
Stem-loop sequence GUUGAAUGUGUUUGUUUAUGGUCAUCUAAGCCAUUUUUCAUCUCGCCAAUUCUUUGUUCAAGCAGUUUUUGGAUAAUCGAACCGAUAGAAUACACCCGCGGAAAUGAUGUUUAGAUGACCAUCAACAAACAACUUCAUC

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).