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BaseInfo

ncRNA ID ath-miR869.1
Species Arabidopsis thaliana
Class miRNA
Genome position chr5:15891579-15891873 [-]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 47 - AUUGGUUCAAUUCUGGUGUUG - 67
Stem-loop(if miRNA)             GA   C         G     A  A   C          U                 C  G        UA       C       -       C       CUAUAA       A             ---C  U   U
GCCCACCAUACA  UUU CAUACGGUA AAGAA GU UCA CUAUCUCAAC CCAGGAUUGGACCAGUA UA GCUCAUCA  GUUAAGC ACAAUCC ACGAUUC UCAUCAG      AAGCAAA CCUUCAUAUCUAU    CU GUU C
||||||||||||  ||| ||||||||| ||||| || ||| |||||||||| ||||||||||||||||| || ||||||||  ||||||| ||||||| ||||||| |||||||      ||||||| |||||||||||||    || |||
CGGGUGGUGUGU  AAA GUAUGCCAU UUCUU CA AGU GAUAGAGUUG GGUCUUAACUUGGUUAU AU CGAGUAGU  CAAUUCG UGUUAGG UGUUAGG AGUAGUC      UUUGUUU GGAAGUAUAGAUA    GA CAA U
            AC   A         A     -  C   U          U                 U  A        CA       U       G       A       ------       C             CUCU  C   A
Stem-loop sequence GCCCACCAUACAGAUUUCCAUACGGUAGAAGAAAGUAUCACCUAUCUCAACUCCAGGAUUGGACCAGUACUAGGCUCAUCAUAGUUAAGCCACAAUCCACGAUUCCUCAUCAGCUAUAAAAGCAAAACCUUCAUAUCUAUCCUUGUUUCUAAACCAGUCUCAUAGAUAUGAAGGCUUUGUUUCUGAUGAAGGAUUGUGGGAUUGUUGCUUAACACUGAUGAGCAUAUUAUUGGUUCAAUUCUGGUGUUGAGAUAGUUGACACUUCUUAUACCGUAUGAAAACAUGUGUGGUGGGC

Reference

1 PMID:17299599
"High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes";
Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC;
PLoS One. 2:e219(2007).
2 PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis";
Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
J Exp Bot. 61:165-177(2010).