ncRNA ID | gra-miR8671 |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr11:54253078-54253268 [+] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 11 - AACUGUUCGUGAUAAGAUGUCGGU - 34 |
Stem-loop(if miRNA) |
-                 CG       A                                              A       UA  UCUGC    A  UGCUUUCUUCAACUGUU  UGAUAAG UGUCGGUGGUUCAAUCUUUAUAUCCCAUGGUGCUAAUGUAUCUUCU GAGGCCA  UA     UGGA U  |||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||     |||| A  ACGAAAGAAGUUGAUAA  ACUAUUC ACAGCCACCAAGUUAGAAAUAUAGGGUACCACGAUUACAUAGAAGA CUCCGGU  AU     AUCU A U                 AA       C                                              C       CC  ---UU    U |
Stem-loop sequence | UGCUUUCUUCAACUGUUCGUGAUAAGAUGUCGGUGGUUCAAUCUUUAUAUCCCAUGGUGCUAAUGUAUCUUCUAGAGGCCAUAUAUCUGCUGGAAUAAUUCUAUUUACCUGGCCUCCAGAAGAUACAUUAGCACCAUGGGAUAUAAAGAUUGAACCACCGACACCUUAUCAAAAAUAGUUGAAGAAAGCAU |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |