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BaseInfo

ncRNA ID gra-miR8671
Species Gossypium raimondii
Class miRNA
Genome position chr11:54253078-54253268 [+]
Reference genome Graimondii2_0
Source miRBase
Length 24
Mature sequence(if miRNA) 11 - AACUGUUCGUGAUAAGAUGUCGGU - 34
Stem-loop(if miRNA) -                 CG       A                                              A       UA  UCUGC    A
 UGCUUUCUUCAACUGUU  UGAUAAG UGUCGGUGGUUCAAUCUUUAUAUCCCAUGGUGCUAAUGUAUCUUCU GAGGCCA  UA     UGGA U
 |||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||     |||| A
 ACGAAAGAAGUUGAUAA  ACUAUUC ACAGCCACCAAGUUAGAAAUAUAGGGUACCACGAUUACAUAGAAGA CUCCGGU  AU     AUCU A
U                 AA       C                                              C       CC  ---UU    U
Stem-loop sequence UGCUUUCUUCAACUGUUCGUGAUAAGAUGUCGGUGGUUCAAUCUUUAUAUCCCAUGGUGCUAAUGUAUCUUCUAGAGGCCAUAUAUCUGCUGGAAUAAUUCUAUUUACCUGGCCUCCAGAAGAUACAUUAGCACCAUGGGAUAUAAAGAUUGAACCACCGACACCUUAUCAAAAAUAGUUGAAGAAAGCAU

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).