| ncRNA ID | gra-miR8699 |
| Species | Gossypium raimondii |
| Class | miRNA |
| Genome position | chr11:51833999-51834464 [-] |
| Reference genome | Graimondii2_0 |
| Source | miRBase |
| Length | 24 |
| Mature sequence(if miRNA) | 11 - AGGGCCAUUUUGACAAAACAUGCA - 34 |
| Stem-loop(if miRNA) |
AU U - AU U CAAUCUAU ---- CUAACAAAUUUAAUGAAAGUACCGUUAAAAAAAUUAACGGGGAUGAUGUAAAUUUUCAUACAUGGAAUAUUUUUAAUGAGAUGUAAUUUAUCACUUAGAUAACCUAAUAAGAUAAUUAUACGUGAAAAAUAAAAAAAAUAAAAAAAUAAUACAUUAGAUUAAA UUGG CGUUU UAUGUUUUGUUAAAAUG UCUAAUUGUAUUUUU GGUUUUUUUU UU UUU A |||| ||||| ||||||||||||||||| ||||||||||||||| |||||||||| || ||| AAUU GUAAA GUACAAAACAGUUUUAC GGAUUAACAUAAAAA UCGAAAAAAA CG UUG A GU - C CG C ------AA GUAG UAAACAAAACGAAAAAGAUUGUCUAAAUUAUUUAUUUAAAUUACAAAGUUUAAAAGAAAAGAAAGUUUUCCAAAAUUAGAAAGCAUACAAAAAAAUGACUCUUUUAAAAGAUGACUCAAUUAAAAAAAUCUAUUAAUGAAAAUAAAAGAAAUUUAAUUCUCAA |
| Stem-loop sequence | AUUUGGUCGUUUUAUGUUUUGUUAAAAUGAUUCUAAUUGUAUUUUUUGGUUUUUUUUCAAUCUAUUUUUUCUAACAAAUUUAAUGAAAGUACCGUUAAAAAAAUUAACGGGGAUGAUGUAAAUUUUCAUACAUGGAAUAUUUUUAAUGAGAUGUAAUUUAUCACUUAGAUAACCUAAUAAGAUAAUUAUACGUGAAAAAUAAAAAAAAUAAAAAAAUAAUACAUUAGAUUAAAAAAACUCUUAAUUUAAAGAAAAUAAAAGUAAUUAUCUAAAAAAAUUAACUCAGUAGAAAAUUUUCUCAGUAAAAAAACAUACGAAAGAUUAAAACCUUUUGAAAGAAAAGAAAAUUUGAAACAUUAAAUUUAUUUAUUAAAUCUGUUAGAAAAAGCAAAACAAAUGUUGAUGGCAAAAAAAAAGCUCAAAAAUACAAUUAGGGCCAUUUUGACAAAACAUGCAAAUGUUAAUG |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_012592263.1 |
|
2.5 | PREDICTED: Gossypium raimondii serine carboxypeptidase-like (LOC105770902), mRNA | serine carboxypeptidase-like(LOC105770902) | coding protein | psRNATarget |
| 1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |