ncRNA ID | gra-miR7486i |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr11:29742716-29742791 [+] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 23 |
Mature sequence(if miRNA) | 11 - GCUGACGUGGAAGGAAAUCGCUA - 33 |
Stem-loop(if miRNA) |
-     A    -                     UA  U  AGCGC ACCU GCUGACGUGGAAGGAAAUCGC  CC C  ||||| |||| |||||||||||||||||||||  ||  UCGCG UGGA CGGCUGCACCUUCCUUUAGCG  GG A G     C    U                     CA  G |
Stem-loop sequence | AGCGCAACCUGCUGACGUGGAAGGAAAUCGCUACCUCAGGGACGCGAUUUCCUUCCACGUCGGCUAGGUCGCGCUG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_012632989.1 |
|
2.5 | PREDICTED: Gossypium raimondii ATP-dependent RNA helicase DHX36 (LOC105801732), mRNA | ATP-dependent RNA helicase DHX36(LOC105801732) | coding protein | psRNATarget |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |