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BaseInfo

ncRNA ID gra-miR7486i
Species Gossypium raimondii
Class miRNA
Genome position chr11:29742716-29742791 [+]
Reference genome Graimondii2_0
Source miRBase
Length 23
Mature sequence(if miRNA) 11 - GCUGACGUGGAAGGAAAUCGCUA - 33
Stem-loop(if miRNA) -     A    -                     UA  U
 AGCGC ACCU GCUGACGUGGAAGGAAAUCGC  CC C
 ||||| |||| |||||||||||||||||||||  ||
 UCGCG UGGA CGGCUGCACCUUCCUUUAGCG  GG A
G     C    U                     CA  G
Stem-loop sequence AGCGCAACCUGCUGACGUGGAAGGAAAUCGCUACCUCAGGGACGCGAUUUCCUUCCACGUCGGCUAGGUCGCGCUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012632989.1
ncRNA:23   AUCGCUAAAGGAAGGUGCAGUCG   1
  *|**|||*||||||||||||=||
targets:1498   GAAAGAUCUCCUUCCACGUCGGC   1520

2.5 PREDICTED: Gossypium raimondii ATP-dependent RNA helicase DHX36 (LOC105801732), mRNA ATP-dependent RNA helicase DHX36(LOC105801732) coding protein psRNATarget

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).