ncRNA ID | gra-miR8704 |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr11:27968361-27968712 [-] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 11 - AGUCAGUUCAGGCAGUCAGACCGU - 34 |
Stem-loop(if miRNA) |
C   C                A            C    U    -   C           A                          C        U  AAAAAAGAAAAA   UG       A CUAAGGAUAAUAAGGGGAAAAGGCAGCAAAGAAGAGAAGAGAAUAAGAGUUCUGAAAG  ACA AGUCACGUGGUCUGAC GCCUGAACUGGC AAUU AGGC UCA GGGUGUUAAAA UGUUUUCUUUAUAAGAGAGCCAUGGU CCCUCAAC GG            AAU  AAGUAGC G                                                          G  ||| |||||||||||||||| |||||||||||| |||| |||| ||| ||||||||||| |||||||||||||||||||||||||| |||||||| ||            |||  ||||||| |                                                          U  UGU UCAGUGUGCCAGACUG CGGACUUGACUG UUAA UCCG AGU CCCACAAUUUU AUAAAAGAAAUAUUCUCUCGGUACCA GGGAGUUG UC            CAA  UUUUAAA C                                                          U -   A                A            A    U    G   U           -                          C        C  -----------A   --       - AACGGAGGAAAGAAAUUUUGAGAUUGGAUUGGUUUUAUUUUAAUGUUUUUAUUAUCAA |
Stem-loop sequence | CACACAGUCACGUGGUCUGACAGCCUGAACUGGCCAAUUUAGGCUCACGGGUGUUAAAAAUGUUUUCUUUAUAAGAGAGCCAUGGUCCCCUCAACUGGAAAAAAGAAAAAAAUUGAAGUAGCAGCUAAGGAUAAUAAGGGGAAAAGGCAGCAAAGAAGAGAAGAGAAUAAGAGUUCUGAAAGGUUAACUAUUAUUUUUGUAAUUUUAUUUUGGUUAGGUUAGAGUUUUAAAGAAAGGAGGCAACAAAUUUUAACACUCGUUGAGGGCACCAUGGCUCUCUUAUAAAGAAAAUAUUUUAACACCCUUGAGGCCUUAAUUAGUCAGUUCAGGCAGUCAGACCGUGUGACUAUGU |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |