Search result

BaseInfo

ncRNA ID gra-miR8704
Species Gossypium raimondii
Class miRNA
Genome position chr11:27968361-27968712 [-]
Reference genome Graimondii2_0
Source miRBase
Length 24
Mature sequence(if miRNA) 11 - AGUCAGUUCAGGCAGUCAGACCGU - 34
Stem-loop(if miRNA) C   C                A            C    U    -   C           A                          C        U  AAAAAAGAAAAA   UG       A CUAAGGAUAAUAAGGGGAAAAGGCAGCAAAGAAGAGAAGAGAAUAAGAGUUCUGAAAG
 ACA AGUCACGUGGUCUGAC GCCUGAACUGGC AAUU AGGC UCA GGGUGUUAAAA UGUUUUCUUUAUAAGAGAGCCAUGGU CCCUCAAC GG            AAU  AAGUAGC G                                                          G
 ||| |||||||||||||||| |||||||||||| |||| |||| ||| ||||||||||| |||||||||||||||||||||||||| |||||||| ||            |||  ||||||| |                                                          U
 UGU UCAGUGUGCCAGACUG CGGACUUGACUG UUAA UCCG AGU CCCACAAUUUU AUAAAAGAAAUAUUCUCUCGGUACCA GGGAGUUG UC            CAA  UUUUAAA C                                                          U
-   A                A            A    U    G   U           -                          C        C  -----------A   --       - AACGGAGGAAAGAAAUUUUGAGAUUGGAUUGGUUUUAUUUUAAUGUUUUUAUUAUCAA
Stem-loop sequence CACACAGUCACGUGGUCUGACAGCCUGAACUGGCCAAUUUAGGCUCACGGGUGUUAAAAAUGUUUUCUUUAUAAGAGAGCCAUGGUCCCCUCAACUGGAAAAAAGAAAAAAAUUGAAGUAGCAGCUAAGGAUAAUAAGGGGAAAAGGCAGCAAAGAAGAGAAGAGAAUAAGAGUUCUGAAAGGUUAACUAUUAUUUUUGUAAUUUUAUUUUGGUUAGGUUAGAGUUUUAAAGAAAGGAGGCAACAAAUUUUAACACUCGUUGAGGGCACCAUGGCUCUCUUAUAAAGAAAAUAUUUUAACACCCUUGAGGCCUUAAUUAGUCAGUUCAGGCAGUCAGACCGUGUGACUAUGU

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).