ncRNA ID | gra-miR8717 |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr11:5994050-5994365 [+] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 289 - AUUGGUUGUUCUGAUUCGAGGCUA - 312 |
Stem-loop(if miRNA) |
AAACAA                            U              C A   G    U      C        U          CAA        A               G           AC       UU     -C   UU    G    UUG       AAAUUAGUCUUGGAUCAGAACAACUAAU CCAUAAUCGGGCAA G UUU AAAU GUAAUU AAUUAUAC ACGAAGGUAA   CGAUAUCA AGAUUGCUUUUGGCA AUACUUCGAUG  AUAAGUA  UAUGG  AUG  UGUA CCAU   U       |||||||||||||||||||||||||||| |||||||||||||| | ||| |||| |||||| |||||||| ||||||||||   |||||||| ||||||||||||||| |||||||||||  |||||||  |||||  |||  |||| ||||       UUUAAUCGGAGCUUAGUCUUGUUGGUUA GGUAUUGGUCCGUU C AAA UUUA CGUUAA UUAAUAUG UGCUUCCGUU   GCUAUAGU UCUAACGAAAACCGU UAUGAAGUUAC  UAUUCAU  AUACC  UGU  ACAU GGUA   C ------                            C              A C   G    C      A        U          AUC        C               A           CA       CU     UA   UU    -    UUG |
Stem-loop sequence | AAACAAAAAUUAGUCUUGGAUCAGAACAACUAAUUCCAUAAUCGGGCAACGAUUUGAAAUUGUAAUUCAAUUAUACUACGAAGGUAACAACGAUAUCAAAGAUUGCUUUUGGCAGAUACUUCGAUGACAUAAGUAUUUAUGGCAUGUUUGUAGCCAUUUGUCGUUAUGGUACAUUUGUAUCCAUAUCUACUUAUACCAUUGAAGUAUAUGCCAAAAGCAAUCUCUGAUAUCGCUAUUGCCUUCGUUGUAUAAUUAAAUUGCCAUUUGAAACCAUUGCCUGGUUAUGGCAUUGGUUGUUCUGAUUCGAGGCUAAUUU |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |