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BaseInfo

ncRNA ID gra-miR8717
Species Gossypium raimondii
Class miRNA
Genome position chr11:5994050-5994365 [+]
Reference genome Graimondii2_0
Source miRBase
Length 24
Mature sequence(if miRNA) 289 - AUUGGUUGUUCUGAUUCGAGGCUA - 312
Stem-loop(if miRNA) AAACAA                            U              C A   G    U      C        U          CAA        A               G           AC       UU     -C   UU    G    UUG
      AAAUUAGUCUUGGAUCAGAACAACUAAU CCAUAAUCGGGCAA G UUU AAAU GUAAUU AAUUAUAC ACGAAGGUAA   CGAUAUCA AGAUUGCUUUUGGCA AUACUUCGAUG  AUAAGUA  UAUGG  AUG  UGUA CCAU   U
      |||||||||||||||||||||||||||| |||||||||||||| | ||| |||| |||||| |||||||| ||||||||||   |||||||| ||||||||||||||| |||||||||||  |||||||  |||||  |||  |||| ||||
      UUUAAUCGGAGCUUAGUCUUGUUGGUUA GGUAUUGGUCCGUU C AAA UUUA CGUUAA UUAAUAUG UGCUUCCGUU   GCUAUAGU UCUAACGAAAACCGU UAUGAAGUUAC  UAUUCAU  AUACC  UGU  ACAU GGUA   C
------                            C              A C   G    C      A        U          AUC        C               A           CA       CU     UA   UU    -    UUG
Stem-loop sequence AAACAAAAAUUAGUCUUGGAUCAGAACAACUAAUUCCAUAAUCGGGCAACGAUUUGAAAUUGUAAUUCAAUUAUACUACGAAGGUAACAACGAUAUCAAAGAUUGCUUUUGGCAGAUACUUCGAUGACAUAAGUAUUUAUGGCAUGUUUGUAGCCAUUUGUCGUUAUGGUACAUUUGUAUCCAUAUCUACUUAUACCAUUGAAGUAUAUGCCAAAAGCAAUCUCUGAUAUCGCUAUUGCCUUCGUUGUAUAAUUAAAUUGCCAUUUGAAACCAUUGCCUGGUUAUGGCAUUGGUUGUUCUGAUUCGAGGCUAAUUU

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).