ncRNA ID | gra-miR167a |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr11:3832157-3832384 [-] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 11 - UCAGAUCAUCUUGCAGCUUCA - 31 |
Stem-loop(if miRNA) |
UU    A            C  C           -AUU    -U    AUCACUUUUUCUUUUUUCCUCC     UA  UAUGUUUUUUCUGCCUCUUUAGUGGUAUAUAUGCAGAUUGAAAGACC   UGAG GGUUGAAGCUGC AG AUGAUCUGGUG    AACC  AGCU                      CUUUU  UG                                               A   |||| |||||||||||| || |||||||||||    ||||  ||||                      |||||  ||   ACUC CUAACUUCGACG UC UACUAGACUAC    UUGG  UGGA                      UACUU  GA                                               G UC    A            U  -           AACU    UA    ----------------------     -C  UAUUUCAAGUUCGUCCGACUUCUAUUGAGUUCUUUAAAUUAGGUUUU |
Stem-loop sequence | UUUGAGAGGUUGAAGCUGCCAGCAUGAUCUGGUGAUUAACCUAGCUAUCACUUUUUCUUUUUUCCUCCCUUUUUAUGUAUGUUUUUUCUGCCUCUUUAGUGGUAUAUAUGCAGAUUGAAAGACCAGUUUUGGAUUAAAUUUCUUGAGUUAUCUUCAGCCUGCUUGAACUUUAUAGCUUCAUAGGUAUGGUUUCAACAUCAGAUCAUCUUGCAGCUUCAAUCACUCACU |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |