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BaseInfo

ncRNA ID gra-miR8710a
Species Gossypium raimondii
Class miRNA
Genome position chr11:1450830-1451035 [+]
Reference genome Graimondii2_0
Source miRBase
Length 20
Mature sequence(if miRNA) 11 - AUACAUGAACUUUGGUCCAA - 30
Stem-loop(if miRNA) -       UU          C       C      C   U  AUAAAU    ---   A    UACACCUA  CCUCAAAUUGUGGUUCAAAUAUAUUAAUGGAAGUUUGA
 UAUCAAA  UAUACAUGAA UUUGGUC AAUGUG AAU UC      GAGC   UUU AUUA        GA                                      U
 |||||||  |||||||||| ||||||| |||||| ||| ||      ||||   ||| ||||        ||
 AUAGUUU  GUAUGUACUU AAACUAG UUACAC UUA GG      UGUA   UUU UAUU        UA                                      U
U       -C          A       A      A   C  ----CA    UAC   -    --------  CAUACAUAAGUAAAAAAUUUACACACAUUAACUUAGUU
Stem-loop sequence UAUCAAAUUUAUACAUGAACUUUGGUCCAAUGUGCAAUUUCAUAAAUGAGCUUUAAUUAUACACCUAGACCUCAAAUUGUGGUUCAAAUAUAUUAAUGGAAGUUUGAUUUUGAUUCAAUUACACACAUUUAAAAAAUGAAUACAUACAUUUAUUUUCAUAUGUACGGCAUUACACAUUAGAUCAAAAUUCAUGUAUGCUUUGAUAU

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).