ncRNA ID | gra-miR8710a |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr11:1450830-1451035 [+] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 20 |
Mature sequence(if miRNA) | 11 - AUACAUGAACUUUGGUCCAA - 30 |
Stem-loop(if miRNA) |
-       UU          C       C      C   U  AUAAAU    ---   A    UACACCUA  CCUCAAAUUGUGGUUCAAAUAUAUUAAUGGAAGUUUGA  UAUCAAA  UAUACAUGAA UUUGGUC AAUGUG AAU UC      GAGC   UUU AUUA        GA                                      U  |||||||  |||||||||| ||||||| |||||| ||| ||      ||||   ||| ||||        ||  AUAGUUU  GUAUGUACUU AAACUAG UUACAC UUA GG      UGUA   UUU UAUU        UA                                      U U       -C          A       A      A   C  ----CA    UAC   -    --------  CAUACAUAAGUAAAAAAUUUACACACAUUAACUUAGUU |
Stem-loop sequence | UAUCAAAUUUAUACAUGAACUUUGGUCCAAUGUGCAAUUUCAUAAAUGAGCUUUAAUUAUACACCUAGACCUCAAAUUGUGGUUCAAAUAUAUUAAUGGAAGUUUGAUUUUGAUUCAAUUACACACAUUUAAAAAAUGAAUACAUACAUUUAUUUUCAUAUGUACGGCAUUACACAUUAGAUCAAAAUUCAUGUAUGCUUUGAUAU |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |