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BaseInfo

ncRNA ID gra-miR8635
Species Gossypium raimondii
Class miRNA
Genome position chr11:1104959-1105330 [+]
Reference genome Graimondii2_0
Source miRBase
Length 21
Mature sequence(if miRNA) 11 - UCGGAUCUUCAAACGGUGGAG - 31
Stem-loop(if miRNA) -   U       C                   AA   U  AC  GA       A   CA        UC     --        GA   UGAGGAAAGCCCAACGGGUUUACAGAGUUUGGGGAGUACCUCAUGACUAAGGAAAUAUGAGCAUUCGGCCUUGCUGGAGUUUGAACCCAUGUUUUUU
 GAG UCGGUCU GGAUCUUCAAACGGUGGAG  AUU UG  CG  GUGUCUA GUU  AUUUUAGU  UAGGU  UGUCUCUU  UUC                                                                                                 A
 ||| ||||||| |||||||||||||||||||  ||| ||  ||  ||||||| |||  ||||||||  |||||  ||||||||  |||                                                                                                 U
 CUC AGUCAGA CCUGGGAGUUUGUCACCUU  UAA AC  GC  CGUAGAU UAA  UAAAAUCG  GUUCA  ACAGAGAG  CGG                                                                                                 A
C   C       A                   CA   C  GA  UC       A   AC        GA     AA        UU   AUUGUCUAAGUGUUUCAAACCCCUCUUUACAAUUUUUAAAACCGGAACUAUUCUAAGGUUGGGUACGGAAAUCACCUCAAGAAUGGGUGAUUACGGU
Stem-loop sequence GAGUUCGGUCUCGGAUCUUCAAACGGUGGAGAAAUUUUGACCGGAGUGUCUAAGUUCAAUUUUAGUUCUAGGUUGUCUCUUGAUUCUGAGGAAAGCCCAACGGGUUUACAGAGUUUGGGGAGUACCUCAUGACUAAGGAAAUAUGAGCAUUCGGCCUUGCUGGAGUUUGAACCCAUGUUUUUUAUAUGGCAUUAGUGGGUAAGAACUCCACUAAAGGCAUGGGUUGGAAUCUUAUCAAGGCCAAAAUUUUUAACAUUUCUCCCCAAACUUUGUGAAUCUGUUAGGCUUGAGAGACAAAACUUGAGGCUAAAAUCAAAUAUAGAUGCCUCGAGCACAAUACUUCCACUGUUUGAGGGUCCAAGACUGACCUCC

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).