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BaseInfo

ncRNA ID gra-miR8674a
Species Gossypium raimondii
Class miRNA
Genome position chr10:59836292-59836652 [+]
Reference genome Graimondii2_0
Source miRBase
Length 24
Mature sequence(if miRNA) 328 - UUAGAAAGGGACCAUGGAUGAUGU - 351
Stem-loop(if miRNA) CCA   CCAU             A               U     A        G   CA                                      A            -GAA   A    GUAAAU   A --      -   CUC  - C CUAAGCCCAAGUUUAAGAUUCAAUGUUUGGGG
   UUC    CACAUCAUCUAUG UCUCUUUCUAAUUAU UAAUG CAUUUCAG AAU  UUUUCCAUGUUAUUGACAUAUAAUUUUGGUGAUUUUUU ACCCUGAAUUUU    CCC AACU      CUC A  ACCCUA AAC   GA A C                                U
   |||    ||||||||||||| ||||||||||||||| ||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||| ||||||||||||    ||| ||||      ||| |  |||||| |||   || | |                                U
   AAG    GUGUAGUAGGUAC AGGGAAAGAUUAAUA AUUAC GUAAAGUU UUA  AAAAGGUACAGUAACUGUGUAUUAAAAUCAUUAAAAAA UGGGAUUUAGAG    GGG UUGG      CUG G  UUUAAG UUU   AG A C                                A
GAG   -AUU             C               U     C        G   -A                                      A            AUUA   C    ----AA   - GA      A   ---  U - UUGGAGUUUGAGCUUAAAGUUUAGAACUUGAG
Stem-loop sequence CCAUUCCCAUCACAUCAUCUAUGAUCUCUUUCUAAUUAUUUAAUGACAUUUCAGGAAUCAUUUUCCAUGUUAUUGACAUAUAAUUUUGGUGAUUUUUUAACCCUGAAUUUUGAACCCAAACUGUAAAUCUCAAACCCUAAACCUCGAACCCUAAGCCCAAGUUUAAGAUUCAAUGUUUGGGGUUAGAGUUCAAGAUUUGAAAUUCGAGUUUGAGGUUCAUGAUUUAGAAUUUAGGGUCAAGGUUCGGGAUUAGAGAUUUAGGGUAAAAAAAUUACUAAAAUUAUGUGUCAAUGACAUGGAAAAAAUUGUUGAAAUGCCAUUAUAUAAUUAGAAAGGGACCAUGGAUGAUGUGUUAGAAGAG

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).