ncRNA ID | gra-miR8674a |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr10:59836292-59836652 [+] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 328 - UUAGAAAGGGACCAUGGAUGAUGU - 351 |
Stem-loop(if miRNA) |
CCA   CCAU             A               U     A        G   CA                                      A            -GAA   A    GUAAAU   A --      -   CUC  - C CUAAGCCCAAGUUUAAGAUUCAAUGUUUGGGG    UUC    CACAUCAUCUAUG UCUCUUUCUAAUUAU UAAUG CAUUUCAG AAU  UUUUCCAUGUUAUUGACAUAUAAUUUUGGUGAUUUUUU ACCCUGAAUUUU    CCC AACU      CUC A  ACCCUA AAC   GA A C                                U    |||    ||||||||||||| ||||||||||||||| ||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||| ||||||||||||    ||| ||||      ||| |  |||||| |||   || | |                                U    AAG    GUGUAGUAGGUAC AGGGAAAGAUUAAUA AUUAC GUAAAGUU UUA  AAAAGGUACAGUAACUGUGUAUUAAAAUCAUUAAAAAA UGGGAUUUAGAG    GGG UUGG      CUG G  UUUAAG UUU   AG A C                                A GAG   -AUU             C               U     C        G   -A                                      A            AUUA   C    ----AA   - GA      A   ---  U - UUGGAGUUUGAGCUUAAAGUUUAGAACUUGAG |
Stem-loop sequence | CCAUUCCCAUCACAUCAUCUAUGAUCUCUUUCUAAUUAUUUAAUGACAUUUCAGGAAUCAUUUUCCAUGUUAUUGACAUAUAAUUUUGGUGAUUUUUUAACCCUGAAUUUUGAACCCAAACUGUAAAUCUCAAACCCUAAACCUCGAACCCUAAGCCCAAGUUUAAGAUUCAAUGUUUGGGGUUAGAGUUCAAGAUUUGAAAUUCGAGUUUGAGGUUCAUGAUUUAGAAUUUAGGGUCAAGGUUCGGGAUUAGAGAUUUAGGGUAAAAAAAUUACUAAAAUUAUGUGUCAAUGACAUGGAAAAAAUUGUUGAAAUGCCAUUAUAUAAUUAGAAAGGGACCAUGGAUGAUGUGUUAGAAGAG |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |