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BaseInfo

ncRNA ID ath-miR3933
Species Arabidopsis thaliana
Class miRNA
Genome position chr5:15758105-15758192 [+]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 7 - AGAAGCAAAAUGACGACUCGG - 27
Stem-loop(if miRNA)          A               G           UACAAA
CUUAGAAGA GCAAAAUGACGACUC GACAACAAUAA      A
||||||||| ||||||||||||||| |||||||||||
GAAUCUUCU CGUUUUACUGCUGAG CUGUUGUUAUU      C
         A               G           CAUAAU
Stem-loop sequence CUUAGAAGAAGCAAAAUGACGACUCGGACAACAAUAAUACAAAACUAAUACUUAUUGUUGUCGGAGUCGUCAUUUUGCAUCUUCUAAG

Reference

1 PMID:20621980
"siRNAs from miRNA sites mediate DNA methylation of target genes";
Chellappan P, Xia J, Zhou X, Gao S, Zhang X, Coutino G, Vazquez F, Zhang W, Jin H;
Nucleic Acids Res. 38:6883-6894(2010).