ncRNA ID | gra-miR8657a |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr10:53821358-53821568 [+] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 11 - UGUAGUAAUUGUAGAAGUUCAGGG - 34 |
Stem-loop(if miRNA) |
UA             U             C    -----------------------------------------------ACU  ----    CUAUUU   UUUUUUCAUGAGUAUCUACAGGAUCUUGAU   GAUUGAAUUGUAG AAUUGUAGAAGUU AGGG                                                  AU    UCUG      UUC                              C   ||||||||||||| ||||||||||||| ||||                                                  ||    ||||      |||   CUAAUUUAAUGUU UUAACAUUUUCAA UCCC                                                  CU    UUUA      UAU                              U CC             U             A    AUUAACACAUUUAAAUUUUUUAUUUUCCCAUAAUUAACAUUUUACUUAAU  UUAC    ------   AUACGAUUAUUUACUUAAUAAAAUAUAAAA |
Stem-loop sequence | UAGAUUGAAUUGUAGUAAUUGUAGAAGUUCAGGGACUAUUCUGCUAUUUUUCUUUUUUCAUGAGUAUCUACAGGAUCUUGAUCUAAAAUAUAAAAUAAUUCAUUUAUUAGCAUAUAUAUUUCAUUUCUAAUUCAUUUUACAAUUAAUACCCUUUUAUUUUUUAAAUUUACACAAUUACCCUAAACUUUUACAAUUUUUGUAAUUUAAUCCC |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |