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BaseInfo

ncRNA ID gra-miR8657a
Species Gossypium raimondii
Class miRNA
Genome position chr10:53821358-53821568 [+]
Reference genome Graimondii2_0
Source miRBase
Length 24
Mature sequence(if miRNA) 11 - UGUAGUAAUUGUAGAAGUUCAGGG - 34
Stem-loop(if miRNA) UA             U             C    -----------------------------------------------ACU  ----    CUAUUU   UUUUUUCAUGAGUAUCUACAGGAUCUUGAU
  GAUUGAAUUGUAG AAUUGUAGAAGUU AGGG                                                  AU    UCUG      UUC                              C
  ||||||||||||| ||||||||||||| ||||                                                  ||    ||||      |||
  CUAAUUUAAUGUU UUAACAUUUUCAA UCCC                                                  CU    UUUA      UAU                              U
CC             U             A    AUUAACACAUUUAAAUUUUUUAUUUUCCCAUAAUUAACAUUUUACUUAAU  UUAC    ------   AUACGAUUAUUUACUUAAUAAAAUAUAAAA
Stem-loop sequence UAGAUUGAAUUGUAGUAAUUGUAGAAGUUCAGGGACUAUUCUGCUAUUUUUCUUUUUUCAUGAGUAUCUACAGGAUCUUGAUCUAAAAUAUAAAAUAAUUCAUUUAUUAGCAUAUAUAUUUCAUUUCUAAUUCAUUUUACAAUUAAUACCCUUUUAUUUUUUAAAUUUACACAAUUACCCUAAACUUUUACAAUUUUUGUAAUUUAAUCCC

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).