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BaseInfo

ncRNA ID gra-miR8780
Species Gossypium raimondii
Class miRNA
Genome position chr10:26309228-26309601 [+]
Reference genome Graimondii2_0
Source miRBase
Length 24
Mature sequence(if miRNA) 341 - UUUGAUGAUGUGGCAACAAAGCGC - 364
Stem-loop(if miRNA) C  UG  A  -   A               G    ---  ACUCU  -  -  G     --------A  UGAUGACGCGGCGCGUCCCUGGGGACACGAUUUAGACCACACGUGAAUAGUACAACGGUCAAAAAUUUGACCGUUGCCCCCCCAACGGUAAAAAAAAAAAUCCUAUAAAUACCCCCACCCCUUUUU
 CU  AG GU GCG UUUGUUGCCACGUCA CAAA   GC     GA CG UG CCGUG         UU                                                                                                                              U
 ||  || || ||| ||||||||||||||| ||||   ||     || || || |||||         ||                                                                                                                              U
 GA  UC CG CGC AAACAACGGUGUAGU GUUU   AG     UU UA AA AAUUU         UU                                                                                                                              U
A  GU  -  U   G               A    UUU  -----  U  A  -     UAAUAAACU  UAUCCCUAAAUUCUCUUUAAAUUUUCCUAUAACUCUCGAUUAACUCUAAUUUAUACUUAAACUCUCUUUAAACUUUCCUUUAACUCUCCUUUAACUUUCCUUUAAACUCUGUCCUAAACAAACACU
Stem-loop sequence CCUUGAGAGUGCGAUUUGUUGCCACGUCAGCAAAGCACUCUGACGUGGCCGUGAUUUGAUGACGCGGCGCGUCCCUGGGGACACGAUUUAGACCACACGUGAAUAGUACAACGGUCAAAAAUUUGACCGUUGCCCCCCCAACGGUAAAAAAAAAAAUCCUAUAAAUACCCCCACCCCUUUUUUUUUCACAAACAAAUCCUGUCUCAAAUUUCCUUUCAAUUUCCUCUCAAUUUCCUUUCAAAUUUCUCUCAAAUUCAUAUUUAAUCUCAAUUAGCUCUCAAUAUCCUUUUAAAUUUCUCUUAAAUCCCUAUUUUCAAAUAAUUUUAAAAAAUUUUGAUUUUUUGAUGAUGUGGCAACAAAGCGCUGCCUUGAGA

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).