ncRNA ID | gra-miR8780 |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr10:26309228-26309601 [+] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 341 - UUUGAUGAUGUGGCAACAAAGCGC - 364 |
Stem-loop(if miRNA) |
C  UG  A  -   A               G    ---  ACUCU  -  -  G     --------A  UGAUGACGCGGCGCGUCCCUGGGGACACGAUUUAGACCACACGUGAAUAGUACAACGGUCAAAAAUUUGACCGUUGCCCCCCCAACGGUAAAAAAAAAAAUCCUAUAAAUACCCCCACCCCUUUUU  CU  AG GU GCG UUUGUUGCCACGUCA CAAA   GC     GA CG UG CCGUG         UU                                                                                                                              U  ||  || || ||| ||||||||||||||| ||||   ||     || || || |||||         ||                                                                                                                              U  GA  UC CG CGC AAACAACGGUGUAGU GUUU   AG     UU UA AA AAUUU         UU                                                                                                                              U A  GU  -  U   G               A    UUU  -----  U  A  -     UAAUAAACU  UAUCCCUAAAUUCUCUUUAAAUUUUCCUAUAACUCUCGAUUAACUCUAAUUUAUACUUAAACUCUCUUUAAACUUUCCUUUAACUCUCCUUUAACUUUCCUUUAAACUCUGUCCUAAACAAACACU |
Stem-loop sequence | CCUUGAGAGUGCGAUUUGUUGCCACGUCAGCAAAGCACUCUGACGUGGCCGUGAUUUGAUGACGCGGCGCGUCCCUGGGGACACGAUUUAGACCACACGUGAAUAGUACAACGGUCAAAAAUUUGACCGUUGCCCCCCCAACGGUAAAAAAAAAAAUCCUAUAAAUACCCCCACCCCUUUUUUUUUCACAAACAAAUCCUGUCUCAAAUUUCCUUUCAAUUUCCUCUCAAUUUCCUUUCAAAUUUCUCUCAAAUUCAUAUUUAAUCUCAAUUAGCUCUCAAUAUCCUUUUAAAUUUCUCUUAAAUCCCUAUUUUCAAAUAAUUUUAAAAAAUUUUGAUUUUUUGAUGAUGUGGCAACAAAGCGCUGCCUUGAGA |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |