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BaseInfo

ncRNA ID	gra-miR8670a
Species	Gossypium raimondii
Class	miRNA
Genome position	chr10:9698287-9698428 [-]
Reference genome	Graimondii2_0
Source	miRBase
Length	24
Mature sequence(if miRNA)	109 - AAAGUUGGGCCCCUGUUGGUGCGG - 132
Stem-loop(if miRNA)	-                                           --U           CCCAUUUC     U  CACCGAAGCUAAAGUUGGGCCCCUGUUGGUGCGGGAGCGUCGG   AAAAAAGUGUC        AGACA C  |||||||||||||||||||||||||||||||||||||||||||   |||||||||||        ||||| A  GUGGCUUCGAUUUCAACCCGGGGACAACCACGCCCUCGCAGCC   UUUUUUCACAG        UUUGU A C                                           CAU           --CCCUAU     C
Stem-loop sequence	CACCGAAGCUAAAGUUGGGCCCCUGUUGGUGCGGGAGCGUCGGUAAAAAAGUGUCCCCAUUUCAGACAUCAACUGUUUUAUCCCGACACUUUUUUUACCCGACGCUCCCGCACCAACAGGGGCCCAACUUUAGCUUCGGUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012593302.1	ncRNA:24   GGCGUGGUUGUCCCCGGGUUGAAA   1   |||||||||||||||||||||||| targets:163   CCGCACCAACAGGGGCCCAACUUU   186 Target Full Sequence	0.0	PREDICTED: Gossypium raimondii uncharacterized LOC105771916 (LOC105771916), transcript variant X3, mRNA	uncharacterized LOC105771916(LOC105771916)	coding protein	psRNATarget
XM_012593284.1	ncRNA:24   GGCGUGGUUGUCCCCGGGUUGAAA   1   |||||||||||||||||||||||| targets:544   CCGCACCAACAGGGGCCCAACUUU   567 Target Full Sequence	0.0	PREDICTED: Gossypium raimondii uncharacterized LOC105771905 (LOC105771905), mRNA	uncharacterized LOC105771905(LOC105771905)	coding protein	psRNATarget
XM_012593278.1	ncRNA:24   GGCGUGGUUGUCCCCGGGUUGAAA   1   |||||||||||||||||||||||| targets:595   CCGCACCAACAGGGGCCCAACUUU   618 Target Full Sequence	0.0	PREDICTED: Gossypium raimondii uncharacterized LOC105771896 (LOC105771896), mRNA	uncharacterized LOC105771896(LOC105771896)	coding protein	psRNATarget
XM_012593290.1	ncRNA:24   GGCGUGGUUGUCCCCGGGUUGAAA   1   |||||||||||||||||||||||| targets:492   CCGCACCAACAGGGGCCCAACUUU   515 Target Full Sequence	0.0	PREDICTED: Gossypium raimondii uncharacterized LOC105771910 (LOC105771910), mRNA	uncharacterized LOC105771910(LOC105771910)	coding protein	psRNATarget
XM_012593300.1	ncRNA:24   GGCGUGGUUGUCCCCGGGUUGAAA   1   |||||||||||||||||||||||| targets:163   CCGCACCAACAGGGGCCCAACUUU   186 Target Full Sequence	0.0	PREDICTED: Gossypium raimondii uncharacterized LOC105771916 (LOC105771916), transcript variant X2, mRNA	uncharacterized LOC105771916(LOC105771916)	coding protein	psRNATarget
XM_012593300.1	ncRNA:24   GGCGUGGUUGUCCCCGGGUUGAAA   1   |||||||||||||||||||||||| targets:701   CCGCACCAACAGGGGCCCAACUUU   724 Target Full Sequence	0.0	PREDICTED: Gossypium raimondii uncharacterized LOC105771916 (LOC105771916), transcript variant X2, mRNA	uncharacterized LOC105771916(LOC105771916)	coding protein	psRNATarget
XM_012593295.1	ncRNA:24   GGCGUGGUUGUCCCCGGGUUGAAA   1   |||||||||||||||||||||||| targets:163   CCGCACCAACAGGGGCCCAACUUU   186 Target Full Sequence	0.0	PREDICTED: Gossypium raimondii uncharacterized LOC105771916 (LOC105771916), transcript variant X1, mRNA	uncharacterized LOC105771916(LOC105771916)	coding protein	psRNATarget
XM_012593295.1	ncRNA:24   GGCGUGGUUGUCCCCGGGUUGAAA   1   |||||||||||||||||||||||| targets:743   CCGCACCAACAGGGGCCCAACUUU   766 Target Full Sequence	0.0	PREDICTED: Gossypium raimondii uncharacterized LOC105771916 (LOC105771916), transcript variant X1, mRNA	uncharacterized LOC105771916(LOC105771916)	coding protein	psRNATarget
XM_012593272.1	ncRNA:24   GGCGUGGUUGUCCCCGGGUUGAAA   1   |||||||||||||||||||||||| targets:469   CCGCACCAACAGGGGCCCAACUUU   492 Target Full Sequence	0.0	PREDICTED: Gossypium raimondii uncharacterized LOC105771891 (LOC105771891), mRNA	uncharacterized LOC105771891(LOC105771891)	coding protein	psRNATarget
XM_012593272.1	ncRNA:24   GGCGUGGUUGUCCCCGGGUUGAAA   1   |||||||||||||||||||||||| targets:1134   CCGCACCAACAGGGGCCCAACUUU   1157 Target Full Sequence	0.0	PREDICTED: Gossypium raimondii uncharacterized LOC105771891 (LOC105771891), mRNA	uncharacterized LOC105771891(LOC105771891)	coding protein	psRNATarget
XM_012593269.1	ncRNA:24   GGCGUGGUUGUCCCCGGGUUGAAA   1   |||||||||||||||||||||||| targets:596   CCGCACCAACAGGGGCCCAACUUU   619 Target Full Sequence	0.0	PREDICTED: Gossypium raimondii uncharacterized LOC105771885 (LOC105771885), mRNA	uncharacterized LOC105771885(LOC105771885)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).