| ncRNA ID | gra-miR8633 |
| Species | Gossypium raimondii |
| Class | miRNA |
| Genome position | chr10:6475834-6476001 [-] |
| Reference genome | Graimondii2_0 |
| Source | miRBase |
| Length | 22 |
| Mature sequence(if miRNA) | 137 - UAAGUGAAGAAAGAGGUAGGUU - 158 |
| Stem-loop(if miRNA) |
- A A -AGAA UAAGCUGAGUUUAAGAGGAAUGGUGAACUUAAUUG GAAGGACAACUAAGUGAAGAA GAGGU GGUUUGAAGA GAUGG A ||||||||||||||||||||| ||||| |||||||||| ||||| G CUUCCUGUUGAUUCACUUCUU UUCCG CCAAACUUCU UACUU A C - A AGAUU CUUUCCAAGUACACUGCUUUUGAUCCUCUUCUACU |
| Stem-loop sequence | GAAGGACAACUAAGUGAAGAAAGAGGUAGGUUUGAAGAAGAAGAUGGUAAGCUGAGUUUAAGAGGAAUGGUGAACUUAAUUGAGAUCAUCUUCUCCUAGUUUUCGUCACAUGAACCUUUCUUCAUUUAGAUCUUCAAACCAGCCUUUUCUUCACUUAGUUGUCCUUCC |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_012590800.1 |
|
2.5 | PREDICTED: Gossypium raimondii BRO1 domain-containing protein BROX homolog (LOC105769850), transcript variant X4, mRNA | BRO1 domain-containing protein BROX homolog(LOC105769850) | coding protein | psRNATarget | |||||||||
| XM_012626115.1 |
|
3.0 | PREDICTED: Gossypium raimondii uncharacterized LOC105796405 (LOC105796405), transcript variant X1, mRNA | uncharacterized LOC105796405(LOC105796405) | coding protein | psRNATarget | |||||||||
| XM_012626116.1 |
|
3.0 | PREDICTED: Gossypium raimondii uncharacterized LOC105796405 (LOC105796405), transcript variant X2, mRNA | uncharacterized LOC105796405(LOC105796405) | coding protein | psRNATarget | |||||||||
| XM_012626119.1 |
|
3.0 | PREDICTED: Gossypium raimondii uncharacterized LOC105796406 (LOC105796406), transcript variant X2, mRNA | uncharacterized LOC105796406(LOC105796406) | coding protein | psRNATarget |
| 1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |