| ncRNA ID | gra-miR7484o |
| Species | Gossypium raimondii |
| Class | miRNA |
| Genome position | chr10:2353426-2353600 [+] |
| Reference genome | Graimondii2_0 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 145 - GAUUUAACGUAUAGGGACUAA - 165 |
| Stem-loop(if miRNA) |
A UA C C -A AUUC ACG U UCUACGAC AAUGGGCAAAUUAGUCCCU AUG UAGAUCAAAGAGCAAA UAGUUCUUU GUUAAAA CAUCCA UG CAC A ||||||||||||||||||| ||| |||||||||||||||| ||||||||| ||||||| |||||| || ||| G UUAUUCGUUUAAUCAGGGA UGC AUUUAGUUUCUCGUUU AUCAAGAAA UAAUUUU GUAGGU AC GUG U - UA A A GA GACA -AA - CCAAAUUU |
| Stem-loop sequence | AAAUGGGCAAAUUAGUCCCUUAAUGCUAGAUCAAAGAGCAAACUAGUUCUUUAGUUAAAAAUUCCAUCCAACGUGUCACUCUACGACAGUUUUAAACCGUGCAAAUGGAUGACAGUUUUAAUAGAAAGAACUAAUUUGCUCUUUGAUUUAACGUAUAGGGACUAAUUUGCUUAUU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_012628154.1 |
|
2.5 | PREDICTED: Gossypium raimondii beta-1,3-galactosyltransferase 15-like (LOC105798183), transcript variant X1, mRNA | beta-1,3-galactosyltransferase 15-like(LOC105798183) | coding protein | psRNATarget | |||||||||
| XM_012628155.1 |
|
2.5 | PREDICTED: Gossypium raimondii beta-1,3-galactosyltransferase 15-like (LOC105798183), transcript variant X2, mRNA | beta-1,3-galactosyltransferase 15-like(LOC105798183) | coding protein | psRNATarget | |||||||||
| XM_012628156.1 |
|
2.5 | PREDICTED: Gossypium raimondii beta-1,3-galactosyltransferase 15-like (LOC105798183), transcript variant X3, mRNA | beta-1,3-galactosyltransferase 15-like(LOC105798183) | coding protein | psRNATarget | |||||||||
| XM_012596682.1 |
|
3.0 | PREDICTED: Gossypium raimondii YLP motif-containing protein 1-like (LOC105774258), mRNA | YLP motif-containing protein 1-like(LOC105774258) | coding protein | psRNATarget |
| 1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |