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BaseInfo

ncRNA ID	gra-miR7484f
Species	Gossypium raimondii
Class	miRNA
Genome position	chr10:2352557-2352799 [-]
Reference genome	Graimondii2_0
Source	miRBase
Length	21
Mature sequence(if miRNA)	11 - UAUCUAACGUGUAGGGACUAA - 31
Stem-loop(if miRNA)	A                    UC        C       A  G        UU   G        -      UU             -UUUA CG   UUGACGAAUUAACCAAACAGUUACAC  AAUGGGCAAAUUAGUCUUUG  CGUUAGAU AAAGAGC AA UGGUUCUU  UGU UAAAAAUU CAUUCG  UUUAUUGUUAAAA     G  UGG                          G  ||||||||||||||||||||  |||||||| ||||||| || ||||||||  ||| |||||||| ||||||  |||||||||||||     |  |||                          U  UUACCCGUUUAAUCAGGGAU  GCAAUCUA UUUCUCG UU AUUAGGAA  ACA AUUUUUAA GUAGGU  AGAUGAUAAUUUU     A  AGA                          G -                    GU        U       A  G        -U   -        A      -U             UGACC --   ACAUUCAGUCUUAUACGAUGUACACC
Stem-loop sequence	AAAUGGGCAAAUUAGUCUUUGUCCGUUAGAUCAAAGAGCAAAGUGGUUCUUUUUGUGUAAAAAUUCAUUCGUUUUUAUUGUUAAAAUUUAGCGUGGUUGACGAAUUAACCAAACAGUUACACGUGCCACAUGUAGCAUAUUCUGACUUACAAGAACCAGUUUUUAAUAGUAGAUUGGAUGAAAUUUUUAACAUAAGGAUUAGUUAGCUCUUUUAUCUAACGUGUAGGGACUAAUUUGCCCAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012628156.1	ncRNA:21   AAUCAGGGAUGUGCAAUCUAU   1   ||||||||||=|||||||||* targets:2215   UUAGUCCCUAUACGUUAGAUU   2235 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii beta-1,3-galactosyltransferase 15-like (LOC105798183), transcript variant X3, mRNA	beta-1,3-galactosyltransferase 15-like(LOC105798183)	coding protein	psRNATarget
XM_012628155.1	ncRNA:21   AAUCAGGGAUGUGCAAUCUAU   1   ||||||||||=|||||||||* targets:2280   UUAGUCCCUAUACGUUAGAUU   2300 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii beta-1,3-galactosyltransferase 15-like (LOC105798183), transcript variant X2, mRNA	beta-1,3-galactosyltransferase 15-like(LOC105798183)	coding protein	psRNATarget
XM_012628154.1	ncRNA:21   AAUCAGGGAUGUGCAAUCUAU   1   ||||||||||=|||||||||* targets:2291   UUAGUCCCUAUACGUUAGAUU   2311 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii beta-1,3-galactosyltransferase 15-like (LOC105798183), transcript variant X1, mRNA	beta-1,3-galactosyltransferase 15-like(LOC105798183)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).