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BaseInfo

ncRNA ID gra-miR8650
Species Gossypium raimondii
Class miRNA
Genome position chr10:1206814-1207083 [+]
Reference genome Graimondii2_0
Source miRBase
Length 24
Mature sequence(if miRNA) 237 - AGUGGAAGGACAAAAUGCAAUCUG - 260
Stem-loop(if miRNA) UGG    A   -         G      A       U       -  A      --A   ----    UAGGUUAAAUUAAAGAAUAAAUCAGCAUUUUCUGUUAAAAAUCAUAUCCAUUUUUGCUAUUCAAAAAUGGU
   UAGG GGU AGAUUGCAU UUGUCC UUUUAUU AGAAAAU AG UAAAUU   GUU    CUUU                                                                       G
   |||| ||| ||||||||| |||||| ||||||| ||||||| || ||||||   |||    ||||                                                                       U
   AUUC CCA UCUAACGUA AACAGG AAGGUGA UUUUUUA UC AUUUAA   UAG    AGAA                                                                       A
AUA    -   G         A      -       U       C  -      AAG   GUAA    GACAAUUAUUAACUAAAAAUAUACAGUCGUAUUUCAUGUGUACUGUGAACAUGAGACCAACAAGAUAAUCA
Stem-loop sequence UGGUAGGAGGUAGAUUGCAUGUUGUCCAUUUUAUUUAGAAAAUAGAUAAAUUAGUUCUUUUAGGUUAAAUUAAAGAAUAAAUCAGCAUUUUCUGUUAAAAAUCAUAUCCAUUUUUGCUAUUCAAAAAUGGUGUAACUAAUAGAACAACCAGAGUACAAGUGUCAUGUGUACUUUAUGCUGACAUAUAAAAAUCAAUUAUUAACAGAAGAAAUGGAUGAAAAUUUACUCAUUUUUUUAGUGGAAGGACAAAAUGCAAUCUGACCCUUAAUA

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).