ncRNA ID | gra-miR8650 |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr10:1206814-1207083 [+] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 237 - AGUGGAAGGACAAAAUGCAAUCUG - 260 |
Stem-loop(if miRNA) |
UGG    A   -         G      A       U       -  A      --A   ----    UAGGUUAAAUUAAAGAAUAAAUCAGCAUUUUCUGUUAAAAAUCAUAUCCAUUUUUGCUAUUCAAAAAUGGU    UAGG GGU AGAUUGCAU UUGUCC UUUUAUU AGAAAAU AG UAAAUU   GUU    CUUU                                                                       G    |||| ||| ||||||||| |||||| ||||||| ||||||| || ||||||   |||    ||||                                                                       U    AUUC CCA UCUAACGUA AACAGG AAGGUGA UUUUUUA UC AUUUAA   UAG    AGAA                                                                       A AUA    -   G         A      -       U       C  -      AAG   GUAA    GACAAUUAUUAACUAAAAAUAUACAGUCGUAUUUCAUGUGUACUGUGAACAUGAGACCAACAAGAUAAUCA |
Stem-loop sequence | UGGUAGGAGGUAGAUUGCAUGUUGUCCAUUUUAUUUAGAAAAUAGAUAAAUUAGUUCUUUUAGGUUAAAUUAAAGAAUAAAUCAGCAUUUUCUGUUAAAAAUCAUAUCCAUUUUUGCUAUUCAAAAAUGGUGUAACUAAUAGAACAACCAGAGUACAAGUGUCAUGUGUACUUUAUGCUGACAUAUAAAAAUCAAUUAUUAACAGAAGAAAUGGAUGAAAAUUUACUCAUUUUUUUAGUGGAAGGACAAAAUGCAAUCUGACCCUUAAUA |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |