| ncRNA ID | gra-miR8658 |
| Species | Gossypium raimondii |
| Class | miRNA |
| Genome position | chr10:881077-881292 [+] |
| Reference genome | Graimondii2_0 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 186 - UUUGAAAAGUACAGGGACUAU - 206 |
| Stem-loop(if miRNA) |
A A - U U ACAUCUUUACUUC GAUUUUAAAAUUCAAAUUUAACAAUUGUUAAUUUUUUUUUUUUAACUACUCA AAAUGUGCCUAUA UCCCUGU CUUUUC AAAAUU GGAAUUUA UCA C ||||||||||||| ||||||| |||||| |||||| |||||||| ||| U UUUGUACGGAUAU AGGGACA GAAAAG UUUUAA CUUUAAAU GGA U - C U U U -----------CA ACACGAACAUAAAAAUCCAAGUCUAAAGUUUUAAGUCAAAGUGUACCGAUGG |
| Stem-loop sequence | AAAAUGUGCCUAUAAUCCCUGUCUUUUCUAAAAUUUGGAAUUUAACAUCUUUACUUCUCAGAUUUUAAAAUUCAAAUUUAACAAUUGUUAAUUUUUUUUUUUUAACUACUCACUUGGUAGCCAUGUGAAACUGAAUUUUGAAAUCUGAACCUAAAAAUACAAGCACAAGGACUAAAUUUCUAAUUUUUGAAAAGUACAGGGACUAUAGGCAUGUUU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_012616687.1 |
|
1.5 | PREDICTED: Gossypium raimondii abscisic acid receptor PYR1 (LOC105789348), transcript variant X1, mRNA | abscisic acid receptor PYR1(LOC105789348) | coding protein | psRNATarget | |||||||||
| XM_012578668.1 |
|
1.5 | PREDICTED: Gossypium raimondii uncharacterized LOC105761018 (LOC105761018), mRNA | uncharacterized LOC105761018(LOC105761018) | coding protein | psRNATarget | |||||||||
| XM_012608511.1 |
|
2.5 | PREDICTED: Gossypium raimondii CSC1-like protein At1g69450 (LOC105783203), transcript variant X3, mRNA | CSC1-like protein At1g69450(LOC105783203) | coding protein | psRNATarget | |||||||||
| XM_012612115.1 |
|
2.5 | PREDICTED: Gossypium raimondii ubiquitin-conjugating enzyme E2 10-like (LOC105785915), transcript variant X3, mRNA | ubiquitin-conjugating enzyme E2 10-like(LOC105785915) | coding protein | psRNATarget |
| 1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |