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BaseInfo

ncRNA ID gra-miR8681
Species Gossypium raimondii
Class miRNA
Genome position chr10:705757-706018 [+]
Reference genome Graimondii2_0
Source miRBase
Length 22
Mature sequence(if miRNA) 231 - ACAUUGUUGAGGGUCUAAUCGG - 252
Stem-loop(if miRNA) U   CACU       G     A    -                UUG  CU   -   AGU  - G    GAGAGCACCUCGGUGUAGAUACGACUUGCAAUGCUCAGAGGAGAGAUGUUGGUAUAGCGCAUAACAA
 GUC    AAGCAGU GGUUG ACCC CAACAAUGUCAAGGUA   UC  GUG UAC   CA U GAGG                                                                   U
 |||    ||||||| ||||| |||| ||||||||||||||||   ||  ||| |||   || | ||||
 CAG    UUCGUCG CUAAU UGGG GUUGUUACAGUUCCAU   AG  CAC AUG   GC U GAAC                                                                   A
G   ----       G     C    A                -CG  UU   C   ---  A -    GUUCAUACACCUAAUAUUCGAAAUCCAACUACCUAGCUCAGGGGGUUUGCAUCCACUAAAGGUAUUA
Stem-loop sequence UGUCCACUAAGCAGUGGGUUGAACCCCAACAAUGUCAAGGUAUUGUCCUGUGUACAGUCAUGGAGGGAGAGCACCUCGGUGUAGAUACGACUUGCAAUGCUCAGAGGAGAGAUGUUGGUAUAGCGCAUAACAAUAAUUAUGGAAAUCACCUACGUUUGGGGGACUCGAUCCAUCAACCUAAAGCUUAUAAUCCACAUACUUGCAAGUACGGUACCACUUGAGCUACCUUGACAUUGUUGAGGGUCUAAUCGGCUGCUUGACG

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).