ncRNA ID | gra-miR8681 |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr10:705757-706018 [+] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 22 |
Mature sequence(if miRNA) | 231 - ACAUUGUUGAGGGUCUAAUCGG - 252 |
Stem-loop(if miRNA) |
U   CACU       G     A    -                UUG  CU   -   AGU  - G    GAGAGCACCUCGGUGUAGAUACGACUUGCAAUGCUCAGAGGAGAGAUGUUGGUAUAGCGCAUAACAA  GUC    AAGCAGU GGUUG ACCC CAACAAUGUCAAGGUA   UC  GUG UAC   CA U GAGG                                                                   U  |||    ||||||| ||||| |||| ||||||||||||||||   ||  ||| |||   || | ||||  CAG    UUCGUCG CUAAU UGGG GUUGUUACAGUUCCAU   AG  CAC AUG   GC U GAAC                                                                   A G   ----       G     C    A                -CG  UU   C   ---  A -    GUUCAUACACCUAAUAUUCGAAAUCCAACUACCUAGCUCAGGGGGUUUGCAUCCACUAAAGGUAUUA |
Stem-loop sequence | UGUCCACUAAGCAGUGGGUUGAACCCCAACAAUGUCAAGGUAUUGUCCUGUGUACAGUCAUGGAGGGAGAGCACCUCGGUGUAGAUACGACUUGCAAUGCUCAGAGGAGAGAUGUUGGUAUAGCGCAUAACAAUAAUUAUGGAAAUCACCUACGUUUGGGGGACUCGAUCCAUCAACCUAAAGCUUAUAAUCCACAUACUUGCAAGUACGGUACCACUUGAGCUACCUUGACAUUGUUGAGGGUCUAAUCGGCUGCUUGACG |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |