| ncRNA ID | gra-miR8743c |
| Species | Gossypium raimondii |
| Class | miRNA |
| Genome position | chr10:698905-699139 [+] |
| Reference genome | Graimondii2_0 |
| Source | miRBase |
| Length | 24 |
| Mature sequence(if miRNA) | 11 - UAUGAAAAGUUACAAAAUGGUCAU - 34 |
| Stem-loop(if miRNA) |
- C UC A - UA A A UUUUU CCACCCAUUAUGAAAAGUUAUAAAAUAGUCAUUCGACUAUUCAAUUUUAUCUUUUCUG GU A CAACUAUGA AAGUUACAAAAUGGUCA UC ACUAUU GUAA UUUC UGG G || | ||||||||| ||||||||||||||||| || |||||| |||| |||| ||| CA U GUUGGUAUU UUCAAUGUUUUACUAGU AG AUAAGU UAAA AUAG AAA U A A GA A U UA - - ----- AAACCAGUGGUCCGAUUAUAUUUUUACUUUUGUGAUUUUGUAGGUUACUUCAACCAAC |
| Stem-loop sequence | GUCAUCCAACUAUGAAAAGUUACAAAAUGGUCAUCUAACUAUUAGUAAAUUUCUUUUUUGGCCACCCAUUAUGAAAAGUUAUAAAAUAGUCAUUCGACUAUUCAAUUUUAUCUUUUCUGGUCAACCAACUUCAUUGGAUGUUUUAGUGUUUUCAUUUUUAUAUUAGCCUGGUGACCAAAAAAGAUAAAAUUGAAUAAUGAUUGAUCAUUUUGUAACUUAUUAUGGUUGAGUAACA |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_012595148.1 |
|
1.0 | PREDICTED: Gossypium raimondii probable phosphopantothenoylcysteine decarboxylase (LOC105773354), mRNA | probable phosphopantothenoylcysteine decarboxylase(LOC105773354) | coding protein | psRNATarget | |||||||||
| XM_012613954.1 |
|
1.0 | PREDICTED: Gossypium raimondii uncharacterized LOC105787523 (LOC105787523), mRNA | uncharacterized LOC105787523(LOC105787523) | coding protein | psRNATarget |
| 1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |