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BaseInfo

ncRNA ID	gra-miR8707
Species	Gossypium raimondii
Class	miRNA
Genome position	chr10:117161-117533 [+]
Reference genome	Graimondii2_0
Source	miRBase
Length	24
Mature sequence(if miRNA)	340 - AUAAAAACUUUUGAAUAAUUCAGU - 363
Stem-loop(if miRNA)	UAAAAUGGC         U       U      C    ACCAAC     -   U -------------       CAUUGUGUACAAUGCUUGUGCCAAUUGAAAGCUUUCAUUUUCAUUUUCUUUUAUAGUUUAAUAUUUUUUUUCUUGAAAUAGCUUUAAACAUCACGAAUAUACGGAUUAAAAUAUAAAUA          UAUUGAAUU UUCAAAA UUUUUA UUAA      GCUUA UUG A             UGGCUUU                                                                                                                       A          ||||||||| ||||||| |||||| ||||      ||||| ||| |             |||||||                                                                                                                       A          GUGACUUAA AAGUUUU AAAAAU AAUU      UAACU AAU A             UUUAAGU                                                                                                                       U GUAACUUUA         U       C      A    ---CAA     C   - AUUAAAAAAAAAA       CGAUAACUUGAGGUUUGCUGCUAAGCUGCUAGCUACACUAUUUAGUUAUGGAUAACUACUCAUUUUGUAAGGAAUCUAGAAUUAACUAAACUACUAGUUACAACUUCUAAUCUCUUUUU
Stem-loop sequence	UAAAAUGGCUAUUGAAUUUUUCAAAAUUUUUUACUUAAACCAACGCUUAUUGUAUGGCUUUCAUUGUGUACAAUGCUUGUGCCAAUUGAAAGCUUUCAUUUUCAUUUUCUUUUAUAGUUUAAUAUUUUUUUUCUUGAAAUAGCUUUAAACAUCACGAAUAUACGGAUUAAAAUAUAAAUAAAUUUUUUCUCUAAUCUUCAACAUUGAUCAUCAAAUCAAUUAAGAUCUAAGGAAUGUUUUACUCAUCAAUAGGUAUUGAUUUAUCACAUCGAUCGUCGAAUCGUCGUUUGGAGUUCAAUAGCUGAAUUUAAAAAAAAAAUUAAUAACUCAAUAACUUAAAUAAAAACUUUUGAAUAAUUCAGUGAUUUCAAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012633193.1	ncRNA:24   UGACUUAAUAAGUUUUCAAAAAUA   1   |=*|=||||||||||||||||||| targets:621   AUCGGAUUAUUCAAAAGUUUUUAU   644 Target Full Sequence	0.0	PREDICTED: Gossypium raimondii actin-like (LOC105801863), transcript variant X1, mRNA	actin-like(LOC105801863)	coding protein	psRNATarget
XM_012633194.1	ncRNA:24   UGACUUAAUAAGUUUUCAAAAAUA   1   |=*|=||||||||||||||||||| targets:612   AUCGGAUUAUUCAAAAGUUUUUAU   635 Target Full Sequence	0.0	PREDICTED: Gossypium raimondii actin-like (LOC105801863), transcript variant X2, mRNA	actin-like(LOC105801863)	coding protein	psRNATarget
XM_012611982.1	ncRNA:24   UGACUUAAUAAGUUUUCAAAAAUA   1   |=||||*||||||||||||||||| targets:1462   AUUGAACUAUUCAAAAGUUUUUAU   1485 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii protein bicaudal C homolog 1-A-like (LOC105785813), mRNA	protein bicaudal C homolog 1-A-like(LOC105785813)	coding protein	psRNATarget
XM_012619486.1	ncRNA:24   UGACUUAAUAAGUUUUCAAAAAUA   1   **||=||||*||||=||||||||| targets:2260   UGUGGAUUAAUCAAGAGUUUUUAU   2283 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii protein TRANSPORT INHIBITOR RESPONSE 1 (LOC105791422), transcript variant X1, mRNA	protein TRANSPORT INHIBITOR RESPONSE 1(LOC105791422)	coding protein	psRNATarget
XM_012619487.1	ncRNA:24   UGACUUAAUAAGUUUUCAAAAAUA   1   **||=||||*||||=||||||||| targets:2167   UGUGGAUUAAUCAAGAGUUUUUAU   2190 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii protein TRANSPORT INHIBITOR RESPONSE 1 (LOC105791422), transcript variant X2, mRNA	protein TRANSPORT INHIBITOR RESPONSE 1(LOC105791422)	coding protein	psRNATarget
XM_012612541.1	ncRNA:24   UG---ACUUAAUAAGUUUUCAAAAAUA   1   ||---||=||*|||||||||||*|||| targets:1609   ACCGGUGGAUGAUUCAAAAGUUAUUAU   1635 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii ferredoxin-dependent glutamate synthase, chloroplastic (LOC105786202), transcript variant X1, mRNA	ferredoxin-dependent glutamate synthase, chloroplastic(LOC105786202)	coding protein	psRNATarget
XM_012612542.1	ncRNA:24   UG---ACUUAAUAAGUUUUCAAAAAUA   1   ||---||=||*|||||||||||*|||| targets:1044   ACCGGUGGAUGAUUCAAAAGUUAUUAU   1070 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii ferredoxin-dependent glutamate synthase, chloroplastic (LOC105786202), transcript variant X2, mRNA	ferredoxin-dependent glutamate synthase, chloroplastic(LOC105786202)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).