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BaseInfo

ncRNA ID gra-miR8683
Species Gossypium raimondii
Class miRNA
Genome position chr1:45746048-45746247 [-]
Reference genome Graimondii2_0
Source miRBase
Length 24
Mature sequence(if miRNA) 11 - AGAACUCAUAACACAUUUAGAUAA - 34
Stem-loop(if miRNA) U            C   C     A                   U              G   A                U        UUCA   GUCA
 AAACACAAAAUU UCU AAUGU UUAUGAGUUCUAAUCUAAU GGUGUAUUUUCUAA GUU UAAAAGAGCCUAUUUA AGGCUAAA    UAU    A
 |||||||||||| ||| ||||| ||||||||||||||||||| |||||||||||||| ||| |||||||||||||||| ||||||||    |||    A
 UUUGUGUUUUAA AGA UUACA AAUACUCAAGAUUAGAUUA UCACAUAAAAGAUU CAA AUUUUCUCGGAUAAAU UCCGAUUU    AUA    U
-            U   U     C                   C              A   C                C        UAAA   AUAA
Stem-loop sequence UAAACACAAAAUUCUCUCAAUGUAUUAUGAGUUCUAAUCUAAUUGGUGUAUUUUCUAAGGUUAUAAAAGAGCCUAUUUAUAGGCUAAAUUCAUAUGUCAAAUAAUAAUAAAAUUUUAGCCUCUAAAUAGGCUCUUUUACAACAUUAGAAAAUACACUCAUUAGAUUAGAACUCAUAACACAUUUAGAUAAUUUUGUGUUU

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).