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BaseInfo

ncRNA ID	gra-miR8688
Species	Gossypium raimondii
Class	miRNA
Genome position	chr1:11683035-11683322 [+]
Reference genome	Graimondii2_0
Source	miRBase
Length	24
Mature sequence(if miRNA)	11 - AGAGGAUGCUUUAUAAAACUCAUA - 34
Stem-loop(if miRNA)	-    A     A   G             C        A  CA            A     U  CA     A                A     C C     C  C    A        CC       ---------UA     CAAU  UUUC UCAGA GAG AUGCUUUAUAAAA UCAUACAC AG  CGAGGAAGAAAA UGCAG GG  UUUCA UAUAAUCAAGUAAUUC UUUUA C AUCUC AC AAAG CGGUGACC  GUUACUA           ACCUU    A  |||| ||||| ||| ||||||||||||| |||||||| ||  |||||||||||| ||||| ||  ||||| |||||||||||||||| ||||| | ||||| || |||| ||||||||  |||||||           |||||  GGAG AGUCU CUC UACGAAAUAUUUU AGUAUGUG UC  GUUCCUUUUUUU GUGUC CC  AAGGU AUAUUAGUUCAUUAAG AAAAU G UAGAG UG UUUC GUUAUUGG  CAAUGAU           UGGGA    G A    C     A   G             U        C  AA            A     C  AG     C                C     A C     U  A    C        AA       UUUGAACAAUG     UUAA
Stem-loop sequence	UUUCAUCAGAAGAGGAUGCUUUAUAAAACUCAUACACAAGCACGAGGAAGAAAAAUGCAGUGGCAUUUCAAUAUAAUCAAGUAAUUCAUUUUACCCAUCUCCACCAAAGACGGUGACCCCGUUACUAUAACCUUCAAUAGAAUUAGGGUGUAACAAGUUUUAGUAACAAGGUUAUUGCCUUUAGUUGAGAUCGAUAAAACGAAUUACUUGAUUAUACUGGAAGACCCCUGUGAUUUUUUUCCUUGAACUCGUGUAUGAUUUUUAUAAAGCAUGCUCAUCUGACGAGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012607117.1	ncRNA:24   AUACUCAAAAUAUUUCGUAGGAGA   1   ||||=|*||||||||||||||*|| targets:956   UAUGGGGUUUAUAAAGCAUCCGCU   979 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105782402 (LOC105782402), transcript variant X5, mRNA	uncharacterized LOC105782402(LOC105782402)	coding protein	psRNATarget
XM_012607115.1	ncRNA:24   AUACUCAAAAUAUUUCGUAGGAGA   1   ||||=|*||||||||||||||*|| targets:889   UAUGGGGUUUAUAAAGCAUCCGCU   912 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105782402 (LOC105782402), transcript variant X4, mRNA	uncharacterized LOC105782402(LOC105782402)	coding protein	psRNATarget
XM_012607112.1	ncRNA:24   AUACUCAAAAUAUUUCGUAGGAGA   1   ||||=|*||||||||||||||*|| targets:953   UAUGGGGUUUAUAAAGCAUCCGCU   976 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105782402 (LOC105782402), transcript variant X1, mRNA	uncharacterized LOC105782402(LOC105782402)	coding protein	psRNATarget
XM_012607114.1	ncRNA:24   AUACUCAAAAUAUUUCGUAGGAGA   1   ||||=|*||||||||||||||*|| targets:1488   UAUGGGGUUUAUAAAGCAUCCGCU   1511 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105782402 (LOC105782402), transcript variant X3, mRNA	uncharacterized LOC105782402(LOC105782402)	coding protein	psRNATarget
XM_012607113.1	ncRNA:24   AUACUCAAAAUAUUUCGUAGGAGA   1   ||||=|*||||||||||||||*|| targets:2302   UAUGGGGUUUAUAAAGCAUCCGCU   2325 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105782402 (LOC105782402), transcript variant X2, mRNA	uncharacterized LOC105782402(LOC105782402)	coding protein	psRNATarget
XM_012616883.1	ncRNA:24   AUACUCAAAAUAUUUCGUAGGAGA   1   |||*=||||*|*|||||||||||| targets:145   UAUCGGUUUAACAAAGCAUCCUCU   168 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii 40S ribosomal protein S27-2-like (LOC105789514), mRNA	40S ribosomal protein S27-2-like(LOC105789514)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).