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BaseInfo

ncRNA ID gra-miR8684
Species Gossypium raimondii
Class miRNA
Genome position chr1:11357060-11357238 [-]
Reference genome Graimondii2_0
Source miRBase
Length 21
Mature sequence(if miRNA) 11 - AGAAUGACUGGUUUACUCUUU - 31
Stem-loop(if miRNA) U   C    C              U     U      -     ---    --      UAUACUAUUAAAAC UG   U  UUGACAAAAUAUGUACCUC
 AUG UAGA CAAAGAGUAAAUCA UUAUU CUAUUA AAAAU   UUCA  UCUAUU              U  GCA GG                   U
 ||| |||| |||||||||||||| ||||| |||||| |||||   ||||  ||||||              |  ||| ||
 UAC AUCU GUUUCUCAUUUGGU AGUAA GAUAAU UUUUA   AAGU  AGAUAA              A  UUU UU                   U
-   A    A              C     -      A     UAU    AA      ------------CA --   -  GACUAAAAAUAUUCAGUUG
Stem-loop sequence UAUGCUAGACCAAAGAGUAAAUCAUUUAUUUCUAUUAAAAAUUUCAUCUAUUUAUACUAUUAAAACUUGGCAUGGUUGACAAAAUAUGUACCUCUUGUUGACUUAUAAAAAUCAGUUUUUAACAAUAGAAAUGAAUAUAUUUUAUAAUAGAAUGACUGGUUUACUCUUUGAUCUAACAU

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).