Search result

BaseInfo

ncRNA ID gra-miR7504m
Species Gossypium raimondii
Class miRNA
Genome position chr1:10542437-10542537 [-]
Reference genome Graimondii2_0
Source miRBase
Length 24
Mature sequence(if miRNA) 68 - UUUCUCCUGAUUUUUAGCAUUUUU - 91
Stem-loop(if miRNA) AAU      -------                   A     ----AGU    UUU
   UAGAUU       UUUUCUCCUGAUUUUUAGC UUUUU       UAAA   A
   ||||||       ||||||||||||||||||| |||||       ||||
   GUCUAA       AAAAGAGGAUUAAAAAUCG AAAAG       GUUU   A
ACU      CCUAAGA                   A     GAGAACU    UUA
Stem-loop sequence AAUUAGAUUUUUUCUCCUGAUUUUUAGCAUUUUUAGUUAAAUUUAAAUUUUUGUCAAGAGGAAAAAGCUAAAAAUUAGGAGAAAAAGAAUCCAAUCUGUCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012631475.1
ncRNA:24   UUUUUACGAUUUUUAGUCCUCUUU   1
  =|==||||||||||*|||||||||
targets:546   GAGGAUGCUAAAAAACAGGAGAAA   569

1.5 PREDICTED: Gossypium raimondii UV radiation resistance-associated gene protein-like (LOC105800377), transcript variant X1, mRNA UV radiation resistance-associated gene protein-like(LOC105800377) coding protein psRNATarget

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).