ncRNA ID | ath-miR2937 |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr5:13622416-13622838 [+] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 254 - AUAAGAGCUGUUGAAGGAGUC - 274 |
Stem-loop(if miRNA) |
------ -UA C C A C G U C A A C C CUACAAAACA C AA -AA GC UGAGGCCAGUACCGUAGUUAAUAUUG CAUUUUC CGU GUAAC UAUUGGC AUUUGAU ACU CAACAAG AC AAU AAACGAGAACCAUUUGAUGAUGUUAAUGGUG AACACA GACCCAUCAGCAAACUCUCCUC AAUGGUCA ACCA UUAGAUC UUUAAUGACUCC CAA CUCUUAUGAUGUGGGU UAG A ||||||| ||| ||||| ||||||| ||||||| ||| ||||||| || ||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||| |||| ||||||| |||||||||||| ||| |||||||||||||||| ||| GUAAAAG GUA CAUUG AUAACCG UAAACUA UGA GUUGUUU UG UUA UUUGCUCUUGGUAAACUACUAUAAUUACUAC UUGUGU CUGGGUAGUUGUUUGGGAGGAG UUACUAGU UGGU AAUCUAG AAAUUACUGAGG GUU GAGAAUACUACACCUA AGA U CACCAU UCG U A C U A C A G G A U ---------- A AA GUC -A AAACAUCUGUCAGUCUGGUUUUUGUG |
Stem-loop sequence | CAUUUUCCGUUAGUAACCUAUUGGCCAUUUGAUAACUCCAACAAGGACUAAUCAAACGAGAACCAUUUGAUGAUGUUAAUGGUGAAACACAAGACCCAUCAGCAAACUCUCCUCCAAUGGUCACACCACUACAAAACAUUAGAUCCUUUAAUGACUCCAACAAAACUCUUAUGAUGUGGGUGCUAGUGAGGCCAGUACCGUAGUUAAUAUUGAUGUGUUUUUGGUCUGACUGUCUACAAAAGAAAUCCACAUCAUAAGAGCUGUUGAAGGAGUCAUUAAAAGAUCUAAUGGUUUGAUCAUUAGAGGAGGGUUUGUUGAUGGGUCGUGUGUUGCAUCAUUAAUAUCAUCAAAUGGUUCUCGUUUAAUUCGUAUUUGUUGUAGUCAUCAAAUAGCCAAUAUGUUACGCUAUGUACCACGAAAAUG |
1 | PMID:20042113
"MicroRNA and tasiRNA diversity in mature pollen of Arabidopsis thaliana"; Grant-Downton R, Le Trionnaire G, Schmid R, Rodriguez-Enriquez J, Hafidh S, Mehdi S, Twell D, Dickinson H; BMC Genomics. 10:643(2009). |