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BaseInfo

ncRNA ID ath-miR2937
Species Arabidopsis thaliana
Class miRNA
Genome position chr5:13622416-13622838 [+]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 254 - AUAAGAGCUGUUGAAGGAGUC - 274
Stem-loop(if miRNA)        ------   -UA     C       C       A   C       G  U   C                               A      A                      C        C    CUACAAAACA       C            AA   -AA                GC   UGAGGCCAGUACCGUAGUUAAUAUUG
CAUUUUC      CGU   GUAAC UAUUGGC AUUUGAU ACU CAACAAG AC AAU AAACGAGAACCAUUUGAUGAUGUUAAUGGUG AACACA GACCCAUCAGCAAACUCUCCUC AAUGGUCA ACCA          UUAGAUC UUUAAUGACUCC  CAA   CUCUUAUGAUGUGGGU  UAG                          A
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GUAAAAG      GUA   CAUUG AUAACCG UAAACUA UGA GUUGUUU UG UUA UUUGCUCUUGGUAAACUACUAUAAUUACUAC UUGUGU CUGGGUAGUUGUUUGGGAGGAG UUACUAGU UGGU          AAUCUAG AAAUUACUGAGG  GUU   GAGAAUACUACACCUA  AGA                          U
       CACCAU   UCG     U       A       C   U       A  C   A                               G      G                      A        U    ----------       A            AA   GUC                -A   AAACAUCUGUCAGUCUGGUUUUUGUG
Stem-loop sequence CAUUUUCCGUUAGUAACCUAUUGGCCAUUUGAUAACUCCAACAAGGACUAAUCAAACGAGAACCAUUUGAUGAUGUUAAUGGUGAAACACAAGACCCAUCAGCAAACUCUCCUCCAAUGGUCACACCACUACAAAACAUUAGAUCCUUUAAUGACUCCAACAAAACUCUUAUGAUGUGGGUGCUAGUGAGGCCAGUACCGUAGUUAAUAUUGAUGUGUUUUUGGUCUGACUGUCUACAAAAGAAAUCCACAUCAUAAGAGCUGUUGAAGGAGUCAUUAAAAGAUCUAAUGGUUUGAUCAUUAGAGGAGGGUUUGUUGAUGGGUCGUGUGUUGCAUCAUUAAUAUCAUCAAAUGGUUCUCGUUUAAUUCGUAUUUGUUGUAGUCAUCAAAUAGCCAAUAUGUUACGCUAUGUACCACGAAAAUG

Reference

1 PMID:20042113
"MicroRNA and tasiRNA diversity in mature pollen of Arabidopsis thaliana";
Grant-Downton R, Le Trionnaire G, Schmid R, Rodriguez-Enriquez J, Hafidh S, Mehdi S, Twell D, Dickinson H;
BMC Genomics. 10:643(2009).