ncRNA ID | ath-miR2112-3p |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr1:234006-234159 [-] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 12 - CUUUAUAUCCGCAUUUGCGCA - 32 |
Stem-loop(if miRNA) |
GUAU A C U A G AA ACCAAUA GGU AGCGAAA AC GA AUGAUGCGCAAAUGCGGAUAU AA GUA AUCA GAC CAA GA GCUC ACA A || ||||||||||||||||||||| || ||| |||| ||| ||| || |||| ||| CU UACUACGCGUUUACGCCUAUA UU CAU UAGU CUG GUU CU UGGG UGU A CAGU C U C A A GG ACAAAGA AUU --AAAAG AA |
Stem-loop sequence | GUAUGAAAUGAUGCGCAAAUGCGGAUAUCAAUGUAAAUCAGGACAACAAACCAAUAGAGGUGCUCAGCGAAAACAACAAAAUGUGAAAAGGGUUUAUCAGAAACAUUGGGGUCAUGAUAUACCUUUAUAUCCGCAUUUGCGCAUCAUCUCUGAC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AK229225.1 |
|
0.0 | Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-51-I01 | NA | coding protein | psRNATarget | |||||||||
NM_116302.4 |
|
0.0 | Arabidopsis thaliana pseudo-response regulator 8 (APRR8), mRNA | pseudo-response regulator 8(APRR8) | coding protein | psRNATarget |
1 | PMID:19307293
"Computational and analytical framework for small RNA profiling by high-throughput sequencing"; Fahlgren N, Sullivan CM, Kasschau KD, Chapman EJ, Cumbie JS, Montgomery TA, Gilbert SD, Dasenko M, Backman TW, Givan SA, Carrington JC; RNA. 15:992-1002(2009). |