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BaseInfo

ncRNA ID ath-miR2112-3p
Species Arabidopsis thaliana
Class miRNA
Genome position chr1:234006-234159 [-]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 12 - CUUUAUAUCCGCAUUUGCGCA - 32
Stem-loop(if miRNA) GUAU  A                     C  U   A    G   AA   ACCAAUA  GGU    AGCGAAA   AC
    GA AUGAUGCGCAAAUGCGGAUAU AA GUA AUCA GAC  CAA       GA   GCUC       ACA  A
    || ||||||||||||||||||||| || ||| |||| |||  |||       ||   ||||       |||
    CU UACUACGCGUUUACGCCUAUA UU CAU UAGU CUG  GUU       CU   UGGG       UGU  A
CAGU  C                     U  C   A    A   GG   ACAAAGA  AUU    --AAAAG   AA
Stem-loop sequence GUAUGAAAUGAUGCGCAAAUGCGGAUAUCAAUGUAAAUCAGGACAACAAACCAAUAGAGGUGCUCAGCGAAAACAACAAAAUGUGAAAAGGGUUUAUCAGAAACAUUGGGGUCAUGAUAUACCUUUAUAUCCGCAUUUGCGCAUCAUCUCUGAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK229225.1
ncRNA:21   ACGCGUUUACGCCUAUAUUUC   1
  |*|||||||||||||||||||
targets:2068   UACGCAAAUGCGGAUAUAAAG   2088

0.0 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-51-I01 NA coding protein psRNATarget
NM_116302.4
ncRNA:21   ACGCGUUUACGCCUAUAUUUC   1
  |*|||||||||||||||||||
targets:2068   UACGCAAAUGCGGAUAUAAAG   2088

0.0 Arabidopsis thaliana pseudo-response regulator 8 (APRR8), mRNA pseudo-response regulator 8(APRR8) coding protein psRNATarget

Reference

1 PMID:19307293
"Computational and analytical framework for small RNA profiling by high-throughput sequencing";
Fahlgren N, Sullivan CM, Kasschau KD, Chapman EJ, Cumbie JS, Montgomery TA, Gilbert SD, Dasenko M, Backman TW, Givan SA, Carrington JC;
RNA. 15:992-1002(2009).