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BaseInfo

ncRNA ID	gra-miR7484j
Species	Gossypium raimondii
Class	miRNA
Genome position	chr1:9278760-9278990 [+]
Reference genome	Graimondii2_0
Source	miRBase
Length	23
Mature sequence(if miRNA)	199 - UUUACUCUUUGAUCUAACGUACA - 221
Stem-loop(if miRNA)	G     U C   A              A               -C                          AC     ACUAAUC  CG  - G  AGAAUGAGGUAAAUGUGGCAUGU  AAUUA U UUU UAUGUUAGAUUAAA AGUAAAUUAGUUCUU  UGUUAAAAGUUUUAUCUAUUUUUACU  UAAAA       CA  UA U UC                       C  ||||| | ||| |||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||  |||||       ||  || | ||                       A  UUAAU A AAA AUGCAAUCUAGUUU UCAUUUGGUCAGGAA  ACAAUUUUUAAAGUAGGUAAAAAUGA  AUUUU       CC  GU C GU                       U -     C U   C              C               AA                          CA     -----AA  --  C U  UAUCUUGUUGGUUUAUCAAUGUG
Stem-loop sequence	GAAUUAUUCUUUAUAUGUUAGAUUAAAAAGUAAAUUAGUUCUUCUGUUAAAAGUUUUAUCUAUUUUUACUACUAAAAACUAAUCCACGUAUGUCAGAAUGAGGUAAAUGUGGCAUGUCAUGUGUAACUAUUUGGUUGUUCUAUUGUCCUGCCAAUUUUAACAGUAAAAAUGGAUGAAAUUUUUAACAAAAAGGACUGGUUUACUCUUUGAUCUAACGUACAAAUACUAAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012624832.1	ncRNA:23   ACAUGCAAUCUAGUUUCUCAUUU   1   ||||*|||||||||||||||||| targets:1261   UGUAAGUUAGAUCAAAGAGUAAA   1283 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii uncharacterized protein C18H10.07 (LOC105795278), transcript variant X3, mRNA	uncharacterized protein C18H10.07(LOC105795278)	coding protein	psRNATarget
XM_012602650.1	ncRNA:23   ACAUGCAAUCUAGUUUCUCAUUU   1   |**||||||||||||=||||||| targets:3478   UAAACGUUAGAUCAAGGAGUAAA   3500 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii pentatricopeptide repeat-containing protein At2g17140 (LOC105778903), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At2g17140(LOC105778903)	coding protein	psRNATarget
XM_012602651.1	ncRNA:23   ACAUGCAAUCUAGUUUCUCAUUU   1   |**||||||||||||=||||||| targets:3482   UAAACGUUAGAUCAAGGAGUAAA   3504 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii pentatricopeptide repeat-containing protein At2g17140 (LOC105778903), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At2g17140(LOC105778903)	coding protein	psRNATarget
XM_012602652.1	ncRNA:23   ACAUGCAAUCUAGUUUCUCAUUU   1   ||||=||||||||||||||*||| targets:2126   UGUAUGUUAGAUCAAAGAGCAAA   2148 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii protein NRT1/ PTR FAMILY 8.3-like (LOC105778904), transcript variant X1, mRNA	protein NRT1/ PTR FAMILY 8.3-like(LOC105778904)	coding protein	psRNATarget
XM_012602655.1	ncRNA:23   ACAUGCAAUCUAGUUUCUCAUUU   1   ||||=||||||||||||||*||| targets:2185   UGUAUGUUAGAUCAAAGAGCAAA   2207 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii protein NRT1/ PTR FAMILY 8.3-like (LOC105778904), transcript variant X3, mRNA	protein NRT1/ PTR FAMILY 8.3-like(LOC105778904)	coding protein	psRNATarget
XM_012602653.1	ncRNA:23   ACAUGCAAUCUAGUUUCUCAUUU   1   ||||=||||||||||||||*||| targets:2187   UGUAUGUUAGAUCAAAGAGCAAA   2209 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii protein NRT1/ PTR FAMILY 8.3-like (LOC105778904), transcript variant X2, mRNA	protein NRT1/ PTR FAMILY 8.3-like(LOC105778904)	coding protein	psRNATarget
XM_012625869.1	ncRNA:23   ACAUGCAAUCUAGUUUCUCAUUU   1   |||||*|||||||||||||*||| targets:1830   UGUACAUUAGAUCAAAGAGAAAA   1852 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105796268 (LOC105796268), transcript variant X4, mRNA	uncharacterized LOC105796268(LOC105796268)	coding protein	psRNATarget
XM_012628058.1	ncRNA:23   ACAUGCAAUCUAGUUUCUCAUUU   1   *||||||||||||||||||*||* targets:2376   CGUACGUUAGAUCAAAGAGCAAU   2398 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii pentatricopeptide repeat-containing protein At1g63330-like (LOC105798131), mRNA	pentatricopeptide repeat-containing protein At1g63330-like(LOC105798131)	coding protein	psRNATarget
XM_012617940.1	ncRNA:23   ACAUGCAAUCUAGUUUCUCAUUU   1   ||*|=||||||*||||||||||| targets:1076   UGGAUGUUAGACCAAAGAGUAAA   1098 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii glyoxylate/succinic semialdehyde reductase 1-like (LOC105790362), transcript variant X2, mRNA	glyoxylate/succinic semialdehyde reductase 1-like(LOC105790362)	coding protein	psRNATarget
XM_012582316.1	ncRNA:23   ACAUGCAAUCUAGUUUCUCAUUU   1   |*||=||||||||||||||*||| targets:1586   UAUAUGUUAGAUCAAAGAGCAAA   1608 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii E3 ubiquitin-protein ligase SINAT3 (LOC105763908), mRNA	E3 ubiquitin-protein ligase SINAT3(LOC105763908)	coding protein	psRNATarget
XM_012628011.1	ncRNA:23   ACAUGCAAUCUAGUUUCUCAUUU   1   |*|||*||||||||||*|||||| targets:1066   UAUACAUUAGAUCAAAAAGUAAA   1088 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii transcription factor PIF4-like (LOC105798095), mRNA	transcription factor PIF4-like(LOC105798095)	coding protein	psRNATarget
XM_012627232.1	ncRNA:23   ACAUGCAAUCUAGUUUCUCAUUU   1   |||||*|||*||||||||||||= targets:1544   UGUACAUUAAAUCAAAGAGUAAG   1566 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii homeotic protein knotted-1-like (LOC105797275), mRNA	homeotic protein knotted-1-like(LOC105797275)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).